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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 28029408-28029409 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1033761 None Plasma Cell None MED1 [Search on ENCODE]
GSM1070124 MM1.S B Lymphocyte Blood BRD4 [Search on ENCODE]
GSM894108 MM1.S B Lymphocyte Blood MYC [Search on ENCODE]
GSM1038276 MM1.S B Lymphocyte Blood MED1 [Search on ENCODE]
GSM1038273 MM1.S B Lymphocyte Blood BRD4 [Search on ENCODE]
GSM1121092 MM1.S B Lymphocyte Blood MED1 [Search on ENCODE]
GSM1121094 None B Lymphocyte Blood BRD4 [Search on ENCODE]
GSM1195560 None B Lymphocyte Blood IRF4 [Search on ENCODE]
GSM1195556 None B Lymphocyte Blood MED1 [Search on ENCODE]
GSM1234237 MS1 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1010881 GM12878 B Lymphocyte Blood NFIC [Search on ENCODE]
GSM1010780 GM12878 B Lymphocyte Blood ATF2 [Search on ENCODE]
GSM803531 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM803511 GM12878 B Lymphocyte Blood MEF2A [Search on ENCODE]
GSM1010893 GM12878 B Lymphocyte Blood RUNX3 [Search on ENCODE]
GSM1010858 SK-N-SH Neuroblastoma cell Brain TEAD4 [Search on ENCODE]
GSM1290186 GM12878 B Lymphocyte Blood EP300 [Search on ENCODE]
GSM1333964 GM12878 B Lymphocyte Blood EP300 [Search on ENCODE]
GSM1333965 GM12878 B Lymphocyte Blood EP300 [Search on ENCODE]
GSM1333966 GM12878 B Lymphocyte Blood EP300 [Search on ENCODE]
GSM1334005 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM1334006 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM1542532 NCI-H2052 Epithelium Lung YAP1 [Search on ENCODE]
GSM1542533 NCI-H2052 Epithelium Lung YAP1 [Search on ENCODE]
GSM1696207 IMR90 Fibroblast Lung YAP1 [Search on ENCODE]
GSM1825746 None Fibroblast None T [Search on ENCODE]
ENCSR293QAR_2 GM12878 B Lymphocyte Blood MTA2 [Search on ENCODE]
GSM2302873 MM1.S B Lymphocyte Blood HDAC2 [Search on ENCODE]
GSM2302871 MM1.S B Lymphocyte Blood HDAC3 [Search on ENCODE]
GSM2302870 MM1.S B Lymphocyte Blood HDAC4 [Search on ENCODE]
GSM2302869 MM1.S B Lymphocyte Blood HDAC1 [Search on ENCODE]
GSM2436677 A673 Polygonal Muscle FLI1 [Search on ENCODE]
GSM2436676 A673 Polygonal Muscle FLI1 [Search on ENCODE]
GSM2550203 None Endothelial Cell None POLR2A [Search on ENCODE]
GSM2409682 HS-ES-2M Embryonic Stem Cell epithelioid sarcoma SMARCA4 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.