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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 28029408-28029409 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM778720 GM19201 Lymphoblastoid None DNase [Search on ENCODE]
GSM646568 GM06990 B Lymphocyte Blood DNase [Search on ENCODE]
GSM646565 None Epithelium None DNase [Search on ENCODE]
GSM646570 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM909312 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM878647 None None Fetal Skin Quadriceps Right DNase [Search on ENCODE]
GSM1014510 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM1014528 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM1014529 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM1014518 None Embryonic Fibroblast Heart DNase [Search on ENCODE]
GSM1014532 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM1014508 HA-sp Astrocyte Spinal Cord DNase [Search on ENCODE]
GSM1014519 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM1014526 GM12865 B Lymphocyte Blood DNase [Search on ENCODE]
GSM1014527 AG10803 Fibroblast Skin DNase [Search on ENCODE]
GSM1014530 None Fibroblast Heart DNase [Search on ENCODE]
GSM1014520 None Epithelium None DNase [Search on ENCODE]
GSM849031 None Fibroblast Pulmonary Artery DNase [Search on ENCODE]
GSM849029 None Fibroblast Umbilical Vein DNase [Search on ENCODE]
GSM1220605 None Fibroblast Fetal Skin Back DNase [Search on ENCODE]
GSM1220607 None None Fetal Skin Abdomen DNase [Search on ENCODE]
GSM1220610 None None Fetal Skin Quadriceps Right DNase [Search on ENCODE]
GSM1338307 None Fibroblast None DNase [Search on ENCODE]
GSM1338308 None Fibroblast None DNase [Search on ENCODE]
GSM1338310 None Fibroblast None DNase [Search on ENCODE]
GSM736518 BJ Fibroblast Skin DNase [Search on ENCODE]
GSM736620 GM12878 B Lymphocyte Blood DNase [Search on ENCODE]
GSM736509 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM1024768 None Smooth Muscle Cell Umbilical Vein DNase [Search on ENCODE]
GSM736494 None Embryonic Fibroblast Heart DNase [Search on ENCODE]
GSM736601 None Embryonic Fibroblast Heart DNase [Search on ENCODE]
GSM736521 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736571 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736599 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736573 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736611 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736542 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736618 None Endothelial Cell Kidney DNase [Search on ENCODE]
GSM736575 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736491 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM736612 NHLF Fibroblast Lung DNase [Search on ENCODE]
GSM763534 BJ Fibroblast Skin DNase [Search on ENCODE]
GSM1662258 None Fibroblast None ATAC-seq [Search on ENCODE]
GSM2113548 MM1.S B Lymphocyte Blood ATAC-seq [Search on ENCODE]
ENCSR318PRQ_2 None None Middle Frontal Gyrus DNase [Search on ENCODE]
ENCSR405TXU_1 None Adipocyte None DNase [Search on ENCODE]
ENCSR405TXU_2 None Adipocyte None DNase [Search on ENCODE]
ENCSR512CWR None None Umbilical Cord DNase [Search on ENCODE]
ENCSR548MMD_1 BJ Fibroblast Skin DNase [Search on ENCODE]
ENCSR217TAW_2 None Fibroblast None DNase [Search on ENCODE]
ENCSR859CZM_1 None None occipital lobe DNase [Search on ENCODE]
ENCSR986YWZ_1 None None inferior parietal cortex DNase [Search on ENCODE]
GSM2243034 Gen2.2 Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2174882 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174880 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174879 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174878 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174877 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174876 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174875 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2241148 T47D Epithelium Mammary Gland ATAC-seq [Search on ENCODE]
GSM2241147 T47D Epithelium Mammary Gland ATAC-seq [Search on ENCODE]
GSM1876025 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876024 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876027 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876026 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876021 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876023 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876022 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876028 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM2401442 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2401443 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2898847 None Cardiomyocyte None ATAC-seq [Search on ENCODE]
GSM2898851 None Cardiomyocyte None ATAC-seq [Search on ENCODE]
GSM2430672 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.