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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 205611308-205611309 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1024609 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM817202 None Cortex Fetal Kidney Right DNase [Search on ENCODE]
GSM817210 None Cortex Fetal Kidney Right DNase [Search on ENCODE]
GSM646560 None Epithelium Amnion DNase [Search on ENCODE]
GSM646570 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM753974 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM753973 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM1102740 None Epithelium Fetal Kidney DNase [Search on ENCODE]
GSM878662 None Epithelium Fetal Renal Pelvis DNase [Search on ENCODE]
GSM878667 None Cortex Fetal Kidney DNase [Search on ENCODE]
GSM1027342 None Epithelium Fetal Kidney DNase [Search on ENCODE]
GSM1027323 None Cortex Fetal Kidney DNase [Search on ENCODE]
GSM1027329 None Epithelium Fetal Kidney DNase [Search on ENCODE]
GSM1027350 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM817195 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM817194 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM817197 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM817196 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM1014528 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM1014522 None Th2 None DNase [Search on ENCODE]
GSM1014536 T47D Epithelium Mammary Gland DNase [Search on ENCODE]
GSM1014538 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM849027 None Cortex Kidney DNase [Search on ENCODE]
GSM1220603 None Epithelium Fetal Kidney DNase [Search on ENCODE]
GSM1255279 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1255281 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1255283 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM736552 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM736549 None Cortex Kidney DNase [Search on ENCODE]
GSM736557 None Cortex Kidney DNase [Search on ENCODE]
GSM736548 HRE Epithelium None DNase [Search on ENCODE]
GSM736527 HRE Epithelium None DNase [Search on ENCODE]
GSM736630 None Epithelium None DNase [Search on ENCODE]
GSM736623 None Epithelium None DNase [Search on ENCODE]
GSM736581 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM736588 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024764 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024767 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024784 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024783 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024743 PrEC Epithelium Prostate DNase [Search on ENCODE]
GSM1024742 PrEC Epithelium Prostate DNase [Search on ENCODE]
GSM736539 RPTEC Epithelium Kidney DNase [Search on ENCODE]
GSM1024762 T47D Epithelium Mammary Gland DNase [Search on ENCODE]
GSM1024739 None Th2 Blood DNase [Search on ENCODE]
GSM1443801 hMADS-3 Adipocyte Adipose DNase [Search on ENCODE]
GSM1855979 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1855980 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1855981 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1662257 None Epithelium Corneal Epithelium ATAC-seq [Search on ENCODE]
ENCSR515EWI_1 Caki-2 None Kidney DNase [Search on ENCODE]
ENCSR813CKU None None Urinary Bladder DNase [Search on ENCODE]
ENCSR814KRX_1 HT29 None Colon DNase [Search on ENCODE]
ENCSR814KRX_2 HT29 None Colon DNase [Search on ENCODE]
ENCSR940NLN_1 PC-9 Lung Cancer Cell Lung DNase [Search on ENCODE]
ENCSR940NLN_2 PC-9 Lung Cancer Cell Lung DNase [Search on ENCODE]
GSM2241149 T47D Epithelium Mammary Gland ATAC-seq [Search on ENCODE]
GSM1858670 ZR-75-1 Embryonic Stem Cell Breast DNase [Search on ENCODE]
GSM1858671 ZR-75-1 Embryonic Stem Cell Breast DNase [Search on ENCODE]
GSM1858669 ZR-75-1 Embryonic Stem Cell Breast DNase [Search on ENCODE]
GSM2714247 MCF-7 Epithelium Breast ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.