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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 234393510-234393553 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM614627 HepG2 Epithelium Liver STAG1 [Search on ENCODE]
GSM614626 HepG2 Epithelium Liver STAG1 [Search on ENCODE]
GSM614613 MCF-7 Epithelium Breast RAD21 [Search on ENCODE]
GSM614623 MCF-7 Epithelium Breast STAG1 [Search on ENCODE]
GSM614609 MCF-7 Epithelium Breast STAG1 [Search on ENCODE]
GSM301568 HEK293T Epithelium Embryonic Kidney POLR2A [Search on ENCODE]
GSM325895 None T Lymphocyte Blood CTCF [Search on ENCODE]
GSM1133486 U2OS None Bone TP53 [Search on ENCODE]
GSM651557 None CD36 Cell None SMARCA4 [Search on ENCODE]
GSM651558 None CD36 Cell None SMARCA4 [Search on ENCODE]
GSM822276 GM19240 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM822299 GM12892 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM822294 GM12891 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM822278 GM19238 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1022943 None T Lymphocyte Blood BRD4 [Search on ENCODE]
GSM849303 GM12869 B Lymphocyte Blood CTCF [Search on ENCODE]
GSM1092544 HT1080 None Connective Tissue ERCC3 [Search on ENCODE]
GSM1138594 DU145 Epithelium Prostate BMI1 [Search on ENCODE]
GSM1233887 GM12878 B Lymphocyte Blood CTCF [Search on ENCODE]
GSM1233888 GM12878 B Lymphocyte Blood CTCF [Search on ENCODE]
GSM1233911 GM12878 B Lymphocyte Blood STAG1 [Search on ENCODE]
GSM1233912 GM12878 B Lymphocyte Blood STAG1 [Search on ENCODE]
GSM1233913 GM12878 B Lymphocyte Blood STAG1 [Search on ENCODE]
GSM1233914 GM12890 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1233915 GM12890 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1233916 GM12890 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1233931 GM12890 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233932 GM12890 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233933 GM12891 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1233934 GM12891 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1233953 GM12891 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233954 GM12891 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233955 GM12892 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1233956 GM12892 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1233975 GM12892 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233976 GM12892 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233977 GM18486 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1233979 GM18486 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1233991 GM18486 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233992 GM18486 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233994 GM18505 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234009 GM18505 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234010 GM18526 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234025 GM18526 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234026 GM18526 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234028 GM18951 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234042 GM18951 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234043 GM18951 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234045 GM19099 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234062 GM19193 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234077 GM19193 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234078 GM19238 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234079 GM19238 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234097 GM19238 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234098 GM19238 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234099 GM19239 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234100 GM19239 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234119 GM19239 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234120 GM19239 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234121 GM19240 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234122 GM19240 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234142 GM19240 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234143 GM19240 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234145 GM2255 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234160 GM2255 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234161 GM2255 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234162 GM2588 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234163 GM2588 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234178 GM2588 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234179 GM2588 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234180 GM2610 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234181 GM2610 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234182 GM2610 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234196 GM2610 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234197 GM2610 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234198 GM2630 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234199 GM2630 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234200 GM2630 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234214 GM2630 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234215 GM2630 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234216 MS1 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234217 MS1 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234218 MS1 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234237 MS1 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234238 MS1 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1003581 A549 Epithelium Lung CTCF [Search on ENCODE]
GSM1003500 None Epithelium Mammary Gland H2AZ [Search on ENCODE]
GSM822289 A549 Epithelium Lung CTCF [Search on ENCODE]
GSM1022650 BE2-C Neuroblast Brain CTCF [Search on ENCODE]
GSM822303 None None Brain CTCF [Search on ENCODE]
GSM1022664 GM12864 B Lymphocyte Blood CTCF [Search on ENCODE]
GSM749762 GM12864 B Lymphocyte Blood CTCF [Search on ENCODE]
GSM749686 GM12873 B Lymphocyte Blood CTCF [Search on ENCODE]
GSM749735 None Epithelium None CTCF [Search on ENCODE]
GSM749668 HEK293 Epithelium Embryonic Kidney CTCF [Search on ENCODE]
GSM749687 HEK293 Epithelium Embryonic Kidney CTCF [Search on ENCODE]
GSM1022631 None Epithelium Mammary Gland CTCF [Search on ENCODE]
GSM749753 None Epithelium Mammary Gland CTCF [Search on ENCODE]
GSM671402 None Lymphocyte Blood STAT5B [Search on ENCODE]
GSM1006874 LNCaP Epithelium Prostate CTCF [Search on ENCODE]
GSM1022658 MCF-7 Epithelium Breast CTCF [Search on ENCODE]
GSM1006878 MCF-7 Epithelium Breast CTCF [Search on ENCODE]
GSM822308 MCF-7 Epithelium Breast CTCF [Search on ENCODE]
GSM822309 MCF-7 Epithelium Breast CTCF [Search on ENCODE]
GSM749768 WERI-Rb-1 None Eye CTCF [Search on ENCODE]
GSM803466 H1 Embryonic Stem Cell Embryo RAD21 [Search on ENCODE]
GSM803497 SK-N-SH_RA Neuron Brain RAD21 [Search on ENCODE]
GSM1527926 90-8TL Schwann Cell Brain BRD4 [Search on ENCODE]
GSM489291 GM12878 B Lymphocyte Blood CTCF [Search on ENCODE]
GSM489293 GM12891 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM489295 GM12892 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM489297 GM19240 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1817654 K562 Erythroblast Bone Marrow CTCF [Search on ENCODE]
GSM1861919 HepG2 Epithelium Liver RAD21 [Search on ENCODE]
GSM1684572 PANC-1 None Pancreas CTCF [Search on ENCODE]
GSM1705253 None Embryonic Stem Cell Embryo CTCF [Search on ENCODE]
GSM1705254 None Embryonic Stem Cell Embryo CTCF [Search on ENCODE]
ENCSR304IVU_1 None None Breast POLR2A [Search on ENCODE]
ENCSR402IDP_1 MM.1S B Lymphoblast Blood CTCF [Search on ENCODE]
ENCSR661NXJ_1 None None Breast CTCF [Search on ENCODE]
GSM2305255 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305254 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305253 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305252 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305251 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2297331 HCT-116 Colon cancer cell Colon RAD21 [Search on ENCODE]
GSM2067527 MCF-7 None Breast CTCF [Search on ENCODE]
GSM2067524 MCF-7 None Breast CTCF [Search on ENCODE]
GSM2178296 COLO-829 None None CTCF [Search on ENCODE]
GSM2178295 COLO-829 None None CTCF [Search on ENCODE]
GSM2544245 THP-1 Monocyte None CTCF [Search on ENCODE]
GSM2544244 THP-1 Monocyte None CTCF [Search on ENCODE]
GSM2040767 GM17942 Lymphoblastoid None CTCF [Search on ENCODE]
GSM2296272 HCT-116 colorectal adenocarcinoma HCT116 TP53 [Search on ENCODE]
GSM2296278 Osteosarcoma Cell Line SJSA Osteosarcoma cell None TP53 [Search on ENCODE]
GSM2247247 None Keratinocyte None CTCF [Search on ENCODE]
GSM2877984 MCF-7 Epithelium Breast CTCF [Search on ENCODE]
GSM2747765 HeLa Cervical Carcinoma None CTCF [Search on ENCODE]
GSM2747766 HeLa Cervical Carcinoma None CTCF [Search on ENCODE]
GSM2040770 ID00016 Lymphoblastoid None CTCF [Search on ENCODE]
GSM2747767 HeLa Cervical Carcinoma None CTCF [Search on ENCODE]
GSM2747759 HeLa Cervical Carcinoma None SMC3 [Search on ENCODE]
GSM2877990 MCF-7 Epithelium Breast CTCF [Search on ENCODE]
GSM2877993 MCF-7 Epithelium Breast CTCF [Search on ENCODE]
GSM2671292 MCF-7 Epithelium Breast T [Search on ENCODE]
GSM2671296 MCF-7 Epithelium Breast T [Search on ENCODE]
GSM2671294 MCF-7 Epithelium Breast T [Search on ENCODE]
GSM889427 MDA-MB-453 Epithelium Mammary Gland TFAP2C [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.