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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 209704556-209704557 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM894077 U87 None Brain MAX [Search on ENCODE]
GSM1463930 None Myoblast None MED1 [Search on ENCODE]
GSM1443812 hMADS-3 Adipocyte Adipose PPARG [Search on ENCODE]
GSM1537679 hMADS-3 Adipocyte Adipose MED1 [Search on ENCODE]
GSM1503214 None None Coronary artery smooth muscle TCF21 [Search on ENCODE]
GSM1503215 None None Coronary artery smooth muscle TCF21 [Search on ENCODE]
GSM1684634 None Mesenchymal Stem Cell None CEBPB [Search on ENCODE]
GSM1684635 None Mesenchymal Stem Cell None CEBPB [Search on ENCODE]
GSM1893926 MOLM-14 Myeloid Cell None CDK8 [Search on ENCODE]
GSM1893928 MOLM-14 Myeloid Cell None CDK8 [Search on ENCODE]
ENCSR168SMX_2 None None Liver NR2F2 [Search on ENCODE]
ENCSR382MOM_1 None None Liver YY1 [Search on ENCODE]
ENCSR382MOM_2 None None Liver YY1 [Search on ENCODE]
ENCSR917QNE_1 None None Liver RAD21 [Search on ENCODE]
GSM1845133 MV4;11 Leukemia Cell Blood BRD4 [Search on ENCODE]
GSM2188503 None Osteoblast None CEBPB [Search on ENCODE]
GSM2188502 None Osteoblast None CEBPB [Search on ENCODE]
GSM2330592 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330584 SUM159PT Mammary carcinoma cell Breast EP300 [Search on ENCODE]
GSM2330568 SUM159PT None Breast CEBPB [Search on ENCODE]
GSM2330567 SUM159PT None Breast CEBPB [Search on ENCODE]
GSM2330566 SUM159PT None Breast CEBPB [Search on ENCODE]
GSM2330565 SUM159PT None Breast CEBPB [Search on ENCODE]
GSM2519942 None None Muscle NR3C1 [Search on ENCODE]
GSM2519945 None None Muscle NR3C1 [Search on ENCODE]
GSM2519944 None None Muscle NR3C1 [Search on ENCODE]
GSM2519947 None None Muscle NR3C1 [Search on ENCODE]
GSM2519949 None None Muscle NR3C1 [Search on ENCODE]
GSM2519948 None None Muscle NR3C1 [Search on ENCODE]
GSM2474865 HCT-116 None HCT116 MCM2 [Search on ENCODE]
GSM2519950 None None Muscle KLF15 [Search on ENCODE]
GSM2519951 None None Muscle KLF15 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.