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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 1859831-1859866 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1517753 501-Mel Melanoma Cell None SMARCA4 [Search on ENCODE]
GSM1517754 501-Mel Melanoma Cell None SMARCA4 [Search on ENCODE]
ENCSR223TAV_1 HEK293 Epithelium Embryonic Kidney PRDM10 [Search on ENCODE]
ENCSR223TAV_2 HEK293 Epithelium Embryonic Kidney PRDM10 [Search on ENCODE]
ENCSR468IJT_1 HEK293 Epithelium Embryonic Kidney SP7 [Search on ENCODE]
ENCSR966ULI_2 HEK293 Epithelium Embryonic Kidney PATZ1 [Search on ENCODE]
GSM1586663 LNCaP Epithelium Prostate AR [Search on ENCODE]
GSM1863005 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2687534 None Monocyte Blood RUNX1 [Search on ENCODE]
GSM2359455 PC-9 Lung Cancer Cell Lung BRD4 [Search on ENCODE]
GSM2359451 PC-9 Lung Cancer Cell Lung BRD4 [Search on ENCODE]
GSM2359453 PC-9 Lung Cancer Cell Lung BRD4 [Search on ENCODE]
GSM2735973 MCF-7 human brest cancer cell line None DNMT3A [Search on ENCODE]
GSM2277153 LNCaP Epithelium Prostate HNF4G [Search on ENCODE]
GSM2350452 C4-2 None Prostate BRD4 [Search on ENCODE]
GSM2401454 HepG2 Epithelium Liver FOXA2 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.