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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 153842340-153842341 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM665814 None Epithelium Fetal Heart DNase [Search on ENCODE]
GSM778728 GM19223 Lymphoblastoid None DNase [Search on ENCODE]
GSM778730 GM19238 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM778713 GM19159 Lymphoblastoid None DNase [Search on ENCODE]
GSM778719 GM19200 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM778716 GM19190 Lymphoblastoid None DNase [Search on ENCODE]
GSM778703 GM19131 Lymphoblastoid None DNase [Search on ENCODE]
GSM778704 GM19137 Lymphoblastoid None DNase [Search on ENCODE]
GSM778722 GM19204 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM778698 GM19114 Lymphoblastoid None DNase [Search on ENCODE]
GSM778695 GM19098 Lymphoblastoid None DNase [Search on ENCODE]
GSM778684 GM18859 Lymphoblastoid None DNase [Search on ENCODE]
GSM778670 GM18507 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM778663 GM18486 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM778685 GM18861 Lymphoblastoid None DNase [Search on ENCODE]
GSM778676 GM18519 Lymphoblastoid None DNase [Search on ENCODE]
GSM646568 GM06990 B Lymphocyte Blood DNase [Search on ENCODE]
GSM646560 None Epithelium Amnion DNase [Search on ENCODE]
GSM909312 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM1102737 None T Lymphocyte Cord blood DNase [Search on ENCODE]
GSM816665 GM12878 B Lymphocyte Blood DNase [Search on ENCODE]
GSM816658 GM19238 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM816659 GM19239 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM816648 GM19240 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM1014539 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1014514 None Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1014518 None Embryonic Fibroblast Heart DNase [Search on ENCODE]
GSM1014508 HA-sp Astrocyte Spinal Cord DNase [Search on ENCODE]
GSM1014526 GM12865 B Lymphocyte Blood DNase [Search on ENCODE]
GSM1014524 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1014520 None Epithelium None DNase [Search on ENCODE]
GSM774241 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM849029 None Fibroblast Umbilical Vein DNase [Search on ENCODE]
GSM849026 None Astrocyte Brain DNase [Search on ENCODE]
GSM1220604 None B Lymphocyte Spleen DNase [Search on ENCODE]
GSM1220605 None Fibroblast Fetal Skin Back DNase [Search on ENCODE]
GSM1338307 None Fibroblast None DNase [Search on ENCODE]
GSM1338310 None Fibroblast None DNase [Search on ENCODE]
GSM736496 GM12878 B Lymphocyte Blood DNase [Search on ENCODE]
GSM736620 GM12878 B Lymphocyte Blood DNase [Search on ENCODE]
GSM736494 None Embryonic Fibroblast Heart DNase [Search on ENCODE]
GSM1024786 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM2113548 MM1.S B Lymphocyte Blood ATAC-seq [Search on ENCODE]
ENCSR489NAM_2 OCI-Ly7 B cell lymphoma Blood DNase [Search on ENCODE]
GSM2108588 GM12878 FACS sorted G2 group None ATAC-seq [Search on ENCODE]
GSM1972144 GM12878 B Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM2243041 None Monocyte Blood ATAC-seq [Search on ENCODE]
GSM2243040 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM2243039 None Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2243038 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM2243037 None Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2243034 Gen2.2 Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2243033 CAL-1 Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2174880 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174878 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174876 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM489282 GM12892 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM489285 GM19240 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM489286 GM19238 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM489289 GM19239 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM1876024 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876026 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876023 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876028 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM2898852 LCL Lymphoblastoid Blood ATAC-seq [Search on ENCODE]
GSM2668125 GM12878 Lymphoblastoid Forebrain ATAC-seq [Search on ENCODE]
GSM2401442 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2401444 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2401443 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2898854 LCL Lymphoblastoid Blood ATAC-seq [Search on ENCODE]
GSM2898847 None Cardiomyocyte None ATAC-seq [Search on ENCODE]
GSM2898851 None Cardiomyocyte None ATAC-seq [Search on ENCODE]
GSM2898865 LCL Lymphoblastoid Blood ATAC-seq [Search on ENCODE]
GSM2898863 LCL Lymphoblastoid Blood ATAC-seq [Search on ENCODE]
GSM2898861 LCL Lymphoblastoid Blood ATAC-seq [Search on ENCODE]
GSM2898868 LCL Lymphoblastoid Blood ATAC-seq [Search on ENCODE]
GSM2898869 LCL Lymphoblastoid Blood ATAC-seq [Search on ENCODE]
GSM2702712 None B Lymphocyte None ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.