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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 39282613-39282716 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM768311 H9 Embryonic Stem Cell Embryo FOXP1 [Search on ENCODE]
GSM614632 HepG2 Epithelium Liver HNF4A [Search on ENCODE]
GSM730704 None Endothelial Cell Umbilical Vein FOS [Search on ENCODE]
GSM730703 None Endothelial Cell Umbilical Vein FOS [Search on ENCODE]
GSM610337 K562 Erythroblast Bone Marrow FOS [Search on ENCODE]
GSM610336 K562 Erythroblast Bone Marrow FOS [Search on ENCODE]
GSM542548 U2OS None Bone ESR1 [Search on ENCODE]
GSM542547 U2OS None Bone ESR1 [Search on ENCODE]
GSM1024800 MCF-7 Epithelium Breast ARNT [Search on ENCODE]
GSM894077 U87 None Brain MAX [Search on ENCODE]
GSM798432 TAM_R Epithelium Mammary Gland ESR1 [Search on ENCODE]
GSM798393 None Epithelium Mammary Gland ESR1 [Search on ENCODE]
GSM1019131 MCF-7 Epithelium Breast ESR1 [Search on ENCODE]
GSM575229 Caco-2 Epithelium Colon HNF4A [Search on ENCODE]
GSM999792 None Leiomyoma Cell None PR [Search on ENCODE]
GSM1176701 HEK293 Epithelium Embryonic Kidney NR3C1 [Search on ENCODE]
GSM1257396 None Stromal Cell None NR2F2 [Search on ENCODE]
GSM935434 H1 Embryonic Stem Cell Embryo JUND [Search on ENCODE]
GSM935619 HepG2 Epithelium Liver HNF4A [Search on ENCODE]
GSM935437 HepG2 Epithelium Liver MXI1 [Search on ENCODE]
GSM935649 HepG2 Epithelium Liver JUND [Search on ENCODE]
GSM935364 HepG2 Epithelium Liver JUN [Search on ENCODE]
GSM935278 None Endothelial Cell Umbilical Vein JUN [Search on ENCODE]
GSM935585 None Endothelial Cell Umbilical Vein FOS [Search on ENCODE]
GSM1003614 IMR90 Fibroblast Lung MXI1 [Search on ENCODE]
GSM1006886 None Epithelium Kidney CTCF [Search on ENCODE]
GSM935398 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM935396 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM935397 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM935438 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM803529 H1 Embryonic Stem Cell Embryo JUND [Search on ENCODE]
GSM803499 HepG2 Epithelium Liver EP300 [Search on ENCODE]
GSM803500 HepG2 Epithelium Liver JUND [Search on ENCODE]
GSM803507 HepG2 Epithelium Liver SP1 [Search on ENCODE]
GSM803404 HepG2 Epithelium Liver HNF4G [Search on ENCODE]
GSM803452 HepG2 Epithelium Liver RXRA [Search on ENCODE]
GSM803451 HepG2 Epithelium Liver FOSL2 [Search on ENCODE]
GSM1010865 HepG2 Epithelium Liver MAX [Search on ENCODE]
GSM1010809 HepG2 Epithelium Liver ZEB1 [Search on ENCODE]
GSM1010784 HepG2 Epithelium Liver REST [Search on ENCODE]
GSM1010840 SK-N-SH Neuroblastoma cell Brain FOSL2 [Search on ENCODE]
GSM1164141 DU145 Epithelium Prostate AR [Search on ENCODE]
GSM1164151 DU145 Epithelium Prostate AR [Search on ENCODE]
GSM1308229 HEK293 Epithelium Embryonic Kidney AR [Search on ENCODE]
GSM1308230 HEK293 Epithelium Embryonic Kidney AR [Search on ENCODE]
GSM1308232 HEK293 Epithelium Embryonic Kidney AR [Search on ENCODE]
GSM1308233 HEK293 Epithelium Embryonic Kidney AR [Search on ENCODE]
GSM1503220 None None Coronary artery smooth muscle JUND [Search on ENCODE]
GSM838400 C4-2B Epithelium Prostate RUNX2 [Search on ENCODE]
GSM1703568 None Stromal Cell Endometrium FOSL2 [Search on ENCODE]
GSM1535709 HCT-116 None Colon HNF4A [Search on ENCODE]
GSM1535710 HCT-116 None Colon HNF4A [Search on ENCODE]
GSM1614036 MDA-MB-231 Epithelium Breast JUN [Search on ENCODE]
GSM1861922 HepG2 Epithelium Liver RAD21 [Search on ENCODE]
GSM1716766 LHSAR Epithelium Prostate HOXB13 [Search on ENCODE]
GSM1716769 LHSAR Epithelium Prostate AR [Search on ENCODE]
GSM1716770 LHSAR Epithelium Prostate AR [Search on ENCODE]
ENCSR054FKH_2 HepG2 Epithelium Liver RAD21 [Search on ENCODE]
GSM2026822 HEK293 Epithelium Embryonic Kidney ZNF554 [Search on ENCODE]
GSM2026739 HEK293 Epithelium Embryonic Kidney FEZF1 [Search on ENCODE]
GSM1556929 LY2 None Breast ESR1 [Search on ENCODE]
GSM1917770 HCT-116 Colon cancer cell Colon ATF3 [Search on ENCODE]
GSM2144760 None None endometrioid adenocarcinoma ESR1 [Search on ENCODE]
GSM2040043 MCF-7 None Breast ESR1 [Search on ENCODE]
GSM803448 HepG2 Epithelium Liver HEY1 [Search on ENCODE]
GSM803460 HepG2 Epithelium Liver HNF4A [Search on ENCODE]
GSM2467294 None None endometrioid adenocarcinoma ESR1 [Search on ENCODE]
GSM777644 K562 Erythroblast Bone Marrow FOS [Search on ENCODE]
GSM2519945 None None Muscle NR3C1 [Search on ENCODE]
GSM2519947 None None Muscle NR3C1 [Search on ENCODE]
GSM2519949 None None Muscle NR3C1 [Search on ENCODE]
GSM2519948 None None Muscle NR3C1 [Search on ENCODE]
GSM2797099 None None Breast ESR1 [Search on ENCODE]
GSM2409676 TTC1240 None Malignant rhabdoid tumor SMARCB1 [Search on ENCODE]
GSM2797100 None None Breast ESR1 [Search on ENCODE]
GSM2406727 MCF-7 Epithelium Breast AHR [Search on ENCODE]
GSM2648917 MCF-7 Epithelium Breast ESR1 [Search on ENCODE]
GSM2648916 MCF-7 Epithelium Breast ESR1 [Search on ENCODE]
GSM2648915 MCF-7 Epithelium Breast ESR1 [Search on ENCODE]
GSM2409708 TTC1240 None Malignant rhabdoid tumor SS18 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.