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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 39282613-39282716 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM621759 None Satellite Cells Muscle H3K4me1 [Search on ENCODE]
GSM621741 None Satellite Cells Muscle H3K4me1 [Search on ENCODE]
GSM521890 IMR90 Fibroblast Lung H3K36me3 [Search on ENCODE]
GSM958159 None Keratinocyte Foreskin H3K36me3 [Search on ENCODE]
GSM910576 None None Pancreas H3K4me1 [Search on ENCODE]
GSM646403 None Myoblast Skeletal Muscle H3K4me2 [Search on ENCODE]
GSM621387 None Epithelium Lung H3K36me3 [Search on ENCODE]
GSM534488 None Stromal Cell Adipose H3K4me1 [Search on ENCODE]
GSM1102783 None None Fetal Stomach H3K27ac [Search on ENCODE]
GSM646355 HepG2 Epithelium Liver H3K27ac [Search on ENCODE]
GSM646362 HepG2 Epithelium Liver H3K4me2 [Search on ENCODE]
GSM621418 None Adipocyte Adipose H3K4me1 [Search on ENCODE]
GSM575223 Caco-2 Epithelium Colon H3K4me2 [Search on ENCODE]
GSM956014 None Epithelium Lung H3K36me3 [Search on ENCODE]
GSM1013149 None None Pancreas H3K4me1 [Search on ENCODE]
GSM1058773 None None Fetal Muscle Leg H3K36me3 [Search on ENCODE]
GSM1055821 IMR90 Fibroblast Lung H3K36me3 [Search on ENCODE]
GSM1234068 GM19193 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1003463 DND-41 T Lymphocyte Blood H3K36me3 [Search on ENCODE]
GSM945324 H7 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM798321 HepG2 Epithelium Liver H3K4me1 [Search on ENCODE]
GSM733743 HepG2 Epithelium Liver H3K27ac [Search on ENCODE]
GSM733693 HepG2 Epithelium Liver H3K4me2 [Search on ENCODE]
GSM733690 None Endothelial Cell Umbilical Vein H3K4me1 [Search on ENCODE]
GSM1003562 None Monocyte Blood H3K36me3 [Search on ENCODE]
GSM733704 None Osteoblast Bone H3K4me1 [Search on ENCODE]
GSM945226 SAEC Epithelium Lung H3K36me3 [Search on ENCODE]
GSM1252274 None None Stomach H3K27ac [Search on ENCODE]
GSM1252275 None None Stomach H3K4me1 [Search on ENCODE]
GSM1252276 None None Stomach H3K36me3 [Search on ENCODE]
GSM1252279 None None Stomach H3K4me1 [Search on ENCODE]
GSM1252280 None None Stomach H3K36me3 [Search on ENCODE]
GSM1252283 None None Stomach H3K4me1 [Search on ENCODE]
GSM1252284 None None Stomach H3K36me3 [Search on ENCODE]
GSM1252287 None None Stomach H3K4me1 [Search on ENCODE]
GSM1252290 None None Stomach H3K27ac [Search on ENCODE]
GSM1252291 None None Stomach H3K4me1 [Search on ENCODE]
GSM1252292 None None Stomach H3K36me3 [Search on ENCODE]
GSM1252294 None None Stomach H3K27ac [Search on ENCODE]
GSM1252295 None None Stomach H3K4me1 [Search on ENCODE]
GSM1252296 None None Stomach H3K36me3 [Search on ENCODE]
GSM1252299 None None Stomach H3K27me3 [Search on ENCODE]
GSM1252300 None None Stomach H3K27me3 [Search on ENCODE]
GSM1252301 None None Stomach H3K27me3 [Search on ENCODE]
GSM1252304 None None Stomach H3K4me3 [Search on ENCODE]
GSM1252305 None None Stomach H3K4me3 [Search on ENCODE]
GSM1252306 None None Stomach H3K4me3 [Search on ENCODE]
GSM1252307 None None Stomach H3K4me3 [Search on ENCODE]
GSM1252308 None None Stomach H3K4me3 [Search on ENCODE]
GSM1252311 None None Stomach H3K4me1 [Search on ENCODE]
GSM1252319 None None Stomach H3K4me1 [Search on ENCODE]
GSM1399017 None Multiple myeloma None H3K36me3 [Search on ENCODE]
GSM1418961 IMR90 Fibroblast Lung H3K4me1 [Search on ENCODE]
GSM1663010 EEC16 Epithelium Endometrium H3K27ac [Search on ENCODE]
GSM1633751 None None Kidney H3K36me3 [Search on ENCODE]
GSM1670897 HepG2 Epithelium Liver H3K27ac [Search on ENCODE]
GSM1841086 None T Lymphocyte Blood H3K27ac [Search on ENCODE]
GSM1866085 None None Brain H3K4me1 [Search on ENCODE]
GSM1866095 None None Brain H3K4me1 [Search on ENCODE]
GSM1866128 None None Brain H3K4me1 [Search on ENCODE]
GSM1918573 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM1702528 None None Bone Marrow H3K9ac [Search on ENCODE]
GSM1702531 None None Cord blood H3K9ac [Search on ENCODE]
GSM1702532 None None Cord blood H3K9ac [Search on ENCODE]
GSM753437 H1 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM818034 H1 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM818051 H1 Embryonic Stem Cell Embryo H3K9ac [Search on ENCODE]
GSM2037495 None None Gastric Primary Sample H3K27ac [Search on ENCODE]
GSM772748 None Mesenchymal Stem Cell Adipose H3K4me1 [Search on ENCODE]
GSM2037494 None None Gastric Primary Sample H3K27ac [Search on ENCODE]
GSM2037493 None None Gastric Primary Sample H3K27ac [Search on ENCODE]
GSM2037492 None None Gastric Primary Sample H3K27ac [Search on ENCODE]
GSM2037491 None None Gastric Primary Sample H3K27ac [Search on ENCODE]
GSM2037490 None None Gastric Primary Sample H3K27ac [Search on ENCODE]
GSM1975143 None None Gastric Primary Sample H3K27ac [Search on ENCODE]
GSM1969588 None None Gastric Primary Sample H3K27ac [Search on ENCODE]
GSM772762 None Mesenchymal Stem Cell Adipose H3K4me1 [Search on ENCODE]
GSM2442790 None Endothelial Cell Umbilical Vein H3K27ac [Search on ENCODE]
GSM772816 None Mesenchymal Stem Cell Adipose H3K4me1 [Search on ENCODE]
GSM2214082 7250 Fibroblast None H3K27ac [Search on ENCODE]
GSM2228905 None Keratinocyte Foreskin H3K36me3 [Search on ENCODE]
GSM2228904 None Stem cell Foreskin H3K36me3 [Search on ENCODE]
GSM2037511 None None Gastric Primary Sample H3K4me3 [Search on ENCODE]
GSM2037510 None None Gastric Primary Sample H3K4me3 [Search on ENCODE]
GSM2037509 None None Gastric Primary Sample H3K4me3 [Search on ENCODE]
GSM2037508 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM2037507 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM2037506 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM2037505 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM2037503 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM2037500 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM2037498 None None Gastric Primary Sample H3K4me3 [Search on ENCODE]
GSM2037497 None None Gastric Primary Sample H3K4me3 [Search on ENCODE]
GSM1975162 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM1975154 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM1969607 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM1969599 None None Gastric Primary Sample H3K4me1 [Search on ENCODE]
GSM2067517 MCF-7 None Breast H3K4me1 [Search on ENCODE]
GSM2214106 Rh4 rhabdomyosarcoma None H3K36me3 [Search on ENCODE]
GSM772892 None T Lymphocyte Blood H3K36me3 [Search on ENCODE]
GSM773027 None iPSC None H3K36me3 [Search on ENCODE]
GSM2293454 None None Clear cell renal cell carcinoma tumor H3K27ac [Search on ENCODE]
GSM2293446 None None Clear cell renal cell carcinoma tumor H3K27ac [Search on ENCODE]
GSM2865070 None None Retina H3K4me1 [Search on ENCODE]
GSM2293458 None None Kidney H3K27ac [Search on ENCODE]
GSM2293329 None None Clear cell renal cell carcinoma tumor H3K4me1 [Search on ENCODE]
GSM2258873 MB436 None Breast H3K4me1 [Search on ENCODE]
GSM2293343 None Epithelium None H3K4me1 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.