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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 39282613-39282716 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM530666 IMR90 Fibroblast Lung DNase [Search on ENCODE]
GSM665800 iPS DF 19.7 iPSC None DNase [Search on ENCODE]
GSM665803 iPS DF 4.7 iPSC None DNase [Search on ENCODE]
GSM701531 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM701530 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM701500 None B Lymphocyte Blood DNase [Search on ENCODE]
GSM701496 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM701495 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM701490 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM665835 None Epithelium Small Intestine DNase [Search on ENCODE]
GSM665826 None Epithelium Large Intestine DNase [Search on ENCODE]
GSM665825 None Epithelium Small Intestine DNase [Search on ENCODE]
GSM665818 None Epithelium Large Intestine DNase [Search on ENCODE]
GSM530653 None None Fetal Adrenal Gland DNase [Search on ENCODE]
GSM1036260 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM1024610 None Melanocyte Foreskin DNase [Search on ENCODE]
GSM1024609 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM646565 None Epithelium None DNase [Search on ENCODE]
GSM646560 None Epithelium Amnion DNase [Search on ENCODE]
GSM646561 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM646563 H7 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM646570 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM909313 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM909311 iPS DF 19.11 iPSC Foreskin DNase [Search on ENCODE]
GSM909314 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM909312 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM931361 WI-38 Fibroblast Lung DNase [Search on ENCODE]
GSM931362 WI-38 Fibroblast Lung DNase [Search on ENCODE]
GSM878658 None None Fetal Adrenal Gland DNase [Search on ENCODE]
GSM816662 HepG2 Epithelium Liver DNase [Search on ENCODE]
GSM906381 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM906380 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM1027307 None Melanocyte Foreskin DNase [Search on ENCODE]
GSM1027322 None Epithelium Fetal Heart DNase [Search on ENCODE]
GSM1027348 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM1027334 None None Ovary DNase [Search on ENCODE]
GSM1027321 None None Psoas Muscle DNase [Search on ENCODE]
GSM1027312 None Melanocyte Foreskin DNase [Search on ENCODE]
GSM817169 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM817188 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM817170 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM817162 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM817187 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM1014510 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM1014539 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1014512 NHDF-neo Fibroblast Skin DNase [Search on ENCODE]
GSM1014514 None Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1014529 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM1014518 None Embryonic Fibroblast Heart DNase [Search on ENCODE]
GSM1014532 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM1014533 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM1014508 HA-sp Astrocyte Spinal Cord DNase [Search on ENCODE]
GSM1014519 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM1014524 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1014515 None Myocyte Heart DNase [Search on ENCODE]
GSM1014531 None Embryonic Fibroblast Foreskin DNase [Search on ENCODE]
GSM1014520 None Epithelium None DNase [Search on ENCODE]
GSM723024 IMR90 Fibroblast Lung DNase [Search on ENCODE]
GSM774220 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM774225 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM774229 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM774244 None Melanocyte Foreskin DNase [Search on ENCODE]
GSM774243 None Melanocyte Foreskin DNase [Search on ENCODE]
GSM774228 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM774241 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM774233 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM774210 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM774217 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM774240 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM774214 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM774205 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM849031 None Fibroblast Pulmonary Artery DNase [Search on ENCODE]
GSM849027 None Cortex Kidney DNase [Search on ENCODE]
GSM849026 None Astrocyte Brain DNase [Search on ENCODE]
GSM849028 None Fibroblast Lung DNase [Search on ENCODE]
GSM1102738 None None Psoas Muscle DNase [Search on ENCODE]
GSM1338308 None Fibroblast None DNase [Search on ENCODE]
GSM736596 BJ Fibroblast Skin DNase [Search on ENCODE]
GSM736610 H7 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM736638 H7 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM736606 None Epithelium Amnion DNase [Search on ENCODE]
GSM736631 None Epithelium Amnion DNase [Search on ENCODE]
GSM736594 HA-h Astrocyte Hippocampus DNase [Search on ENCODE]
GSM736554 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736509 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM1024769 None Smooth Muscle Cell Umbilical Vein DNase [Search on ENCODE]
GSM1024768 None Smooth Muscle Cell Umbilical Vein DNase [Search on ENCODE]
GSM736494 None Embryonic Fibroblast Heart DNase [Search on ENCODE]
GSM736601 None Embryonic Fibroblast Heart DNase [Search on ENCODE]
GSM736569 None Epithelium None DNase [Search on ENCODE]
GSM736597 None Epithelium None DNase [Search on ENCODE]
GSM736524 None Embryonic Fibroblast Foreskin DNase [Search on ENCODE]
GSM736541 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM736628 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM736523 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736609 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736571 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736577 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736542 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736511 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736621 None Epithelium None DNase [Search on ENCODE]
GSM736574 None Fibroblast Lung DNase [Search on ENCODE]
GSM736503 None Fibroblast Lung DNase [Search on ENCODE]
GSM736630 None Epithelium None DNase [Search on ENCODE]
GSM736623 None Epithelium None DNase [Search on ENCODE]
GSM736560 None Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM736553 None Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM736530 None Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1024788 None Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM736491 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM736534 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM1024772 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1024771 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1024787 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1024786 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM736612 NHLF Fibroblast Lung DNase [Search on ENCODE]
GSM736536 NHLF Fibroblast Lung DNase [Search on ENCODE]
GSM1024751 NT2-D1 None Embryo DNase [Search on ENCODE]
GSM1024795 NT2-D1 None Embryo DNase [Search on ENCODE]
GSM736497 SKMC Myoblast Skeletal Muscle DNase [Search on ENCODE]
ENCSR240TPI_1 BJ Fibroblast Skin DNase [Search on ENCODE]
ENCSR364MFN_1 None Hepatocyte None DNase [Search on ENCODE]
ENCSR548MMD_1 BJ Fibroblast Skin DNase [Search on ENCODE]
ENCSR691MQJ_1 EL None None DNase [Search on ENCODE]
ENCSR691MQJ_3 EL None None DNase [Search on ENCODE]
GSM2676284 MCF-10A Epithelium Breast DNase [Search on ENCODE]
GSM2898837 None Stem cell None ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.