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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 224287680-224287804 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM301581 HEK293T Epithelium Embryonic Kidney POLR2A [Search on ENCODE]
GSM301568 HEK293T Epithelium Embryonic Kidney POLR2A [Search on ENCODE]
GSM1198994 ReN-VM Neural Stem Cell None SOX2 [Search on ENCODE]
GSM1198993 ReN-VM Neural Stem Cell None SOX2 [Search on ENCODE]
GSM1124067 HUES64 Embryonic Stem Cell Embryo POU5F1 [Search on ENCODE]
GSM1124070 HUES64 Embryonic Stem Cell Embryo NANOG [Search on ENCODE]
GSM822300 H1 Embryonic Stem Cell Embryo POLR2A [Search on ENCODE]
GSM798390 None Epithelium Mammary Gland ESR1 [Search on ENCODE]
GSM894103 H2171 Epithelium Lung MAX [Search on ENCODE]
GSM894102 H2171 Epithelium Lung MYC [Search on ENCODE]
GSM1122305 ME-1 Leukemia Cell None MYH11 [Search on ENCODE]
GSM1008617 H2171 Epithelium Lung MAX [Search on ENCODE]
GSM1291199 None None Cord blood TAL1 [Search on ENCODE]
GSM803427 H1 Embryonic Stem Cell Embryo TCF12 [Search on ENCODE]
GSM803484 H1 Embryonic Stem Cell Embryo POLR2A [Search on ENCODE]
GSM803366 H1 Embryonic Stem Cell Embryo POLR2A [Search on ENCODE]
GSM1010742 H1 Embryonic Stem Cell Embryo ATF2 [Search on ENCODE]
GSM1010805 H1 Embryonic Stem Cell Embryo TAF1 [Search on ENCODE]
GSM1010804 H1 Embryonic Stem Cell Embryo REST [Search on ENCODE]
GSM1010803 H1 Embryonic Stem Cell Embryo POLR2A [Search on ENCODE]
GSM803471 K562 Erythroblast Bone Marrow HDAC2 [Search on ENCODE]
GSM1164145 DU145 Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1364026 None iPSC None SOX2 [Search on ENCODE]
GSM1505695 HUES64 Embryonic Stem Cell Embryo NANOG [Search on ENCODE]
GSM1505704 HUES64 Embryonic Stem Cell Embryo OTX2 [Search on ENCODE]
GSM1505728 HUES64 Embryonic Stem Cell Embryo POU5F1 [Search on ENCODE]
GSM1697347 HAP-1 None None ATF4 [Search on ENCODE]
GSM1697348 HAP-1 None None ATF4 [Search on ENCODE]
GSM1643795 None Neural Progenitor Cell None SOX2 [Search on ENCODE]
GSM1643797 None Neural Progenitor Cell None SOX2 [Search on ENCODE]
GSM1643798 None Neural Progenitor Cell None SOX2 [Search on ENCODE]
GSM1705267 None Embryonic Stem Cell Embryo POU5F1 [Search on ENCODE]
GSM1705268 None Embryonic Stem Cell Embryo POU5F1 [Search on ENCODE]
ENCSR839SFJ_1 None Neuron None SMARCA4 [Search on ENCODE]
GSM2026757 HEK293 Epithelium Embryonic Kidney ZBTB48 [Search on ENCODE]
GSM1701828 None Neuronal Progenitor cell None SOX2 [Search on ENCODE]
GSM1701825 None hESC None SOX2 [Search on ENCODE]
GSM2305255 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305254 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305253 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305252 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305251 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2166092 HeLa Epithelium Cervix LMNA [Search on ENCODE]
GSM1922947 None Neurosphere None RBPJ [Search on ENCODE]
GSM1922946 None Neurosphere None RBPJ [Search on ENCODE]
GSM748532 H1 Embryonic Stem Cell Embryo POLR2A [Search on ENCODE]
GSM518374 H1 Embryonic Stem Cell Embryo NANOG [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.