Home
Virus
Gene
Disease
Dataset
Download
Help
 
HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 224287680-224287804 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM665819 None None Fetal Brain DNase [Search on ENCODE]
GSM595923 None None Fetal Brain DNase [Search on ENCODE]
GSM595922 None None Fetal Brain DNase [Search on ENCODE]
GSM530651 None None Fetal Brain DNase [Search on ENCODE]
GSM623513 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM1024610 None Melanocyte Foreskin DNase [Search on ENCODE]
GSM1059536 None None Fetal Spinal Cord DNase [Search on ENCODE]
GSM646563 H7 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM646570 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM878616 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM878652 None None Fetal Brain DNase [Search on ENCODE]
GSM878613 H9 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM878661 None None Fetal Spinal Cord DNase [Search on ENCODE]
GSM878615 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM878663 None None Fetal Spinal Cord DNase [Search on ENCODE]
GSM878650 None None Fetal Brain DNase [Search on ENCODE]
GSM878612 H9 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM816632 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM906379 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM1027308 None None Fetal Spinal Cord DNase [Search on ENCODE]
GSM1027319 None None Fetal Testis DNase [Search on ENCODE]
GSM1027328 None None Fetal Brain DNase [Search on ENCODE]
GSM817189 None None Fetal Spinal Cord DNase [Search on ENCODE]
GSM1014532 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM723021 None None Fetal Brain DNase [Search on ENCODE]
GSM736571 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM1024751 NT2-D1 None Embryo DNase [Search on ENCODE]
GSM2065328 None Neuron None ATAC-seq [Search on ENCODE]
GSM2065329 None Neuron None ATAC-seq [Search on ENCODE]
GSM2065330 None Neuron None ATAC-seq [Search on ENCODE]
GSM2065331 None Neuron None ATAC-seq [Search on ENCODE]
GSM2065332 None Neuron None ATAC-seq [Search on ENCODE]
GSM2065333 None Neuron None ATAC-seq [Search on ENCODE]
ENCSR782XFY_1 None None Eye DNase [Search on ENCODE]
ENCSR782XFY_2 None None Eye DNase [Search on ENCODE]
ENCSR318PRQ_1 None None Middle Frontal Gyrus DNase [Search on ENCODE]
ENCSR318PRQ_2 None None Middle Frontal Gyrus DNase [Search on ENCODE]
ENCSR595CSH None None Brain DNase [Search on ENCODE]
ENCSR475VQD_1 None None Brain DNase [Search on ENCODE]
ENCSR475VQD_2 None None Brain DNase [Search on ENCODE]
ENCSR771DAX_1 None None Globus Pallidus DNase [Search on ENCODE]
ENCSR771DAX_2 None None Globus Pallidus DNase [Search on ENCODE]
ENCSR564JUY_2 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
ENCSR910OQF_1 None None Spinal Cord DNase [Search on ENCODE]
ENCSR963ALV None Neural Progenitor Cell None DNase [Search on ENCODE]
ENCSR224IYD_1 None None Medulla Oblongata DNase [Search on ENCODE]
ENCSR224IYD_2 None None Medulla Oblongata DNase [Search on ENCODE]
ENCSR004SUL_2 None iPSC None DNase [Search on ENCODE]
ENCSR706IDL_1 None None Midbrain DNase [Search on ENCODE]
ENCSR910OQF_2 None None Spinal Cord DNase [Search on ENCODE]
ENCSR015BGH_1 None None caudate nucleus DNase [Search on ENCODE]
ENCSR017OZH_1 None Embryonic Stem Cell None DNase [Search on ENCODE]
ENCSR017OZH_2 None Embryonic Stem Cell None DNase [Search on ENCODE]
ENCSR314EZY_1 None iPSC None DNase [Search on ENCODE]
ENCSR314EZY_2 None iPSC None DNase [Search on ENCODE]
ENCSR474GZQ_1 None None Retina DNase [Search on ENCODE]
ENCSR474GZQ_3 None None Retina DNase [Search on ENCODE]
ENCSR474GZQ_4 None None Retina DNase [Search on ENCODE]
ENCSR493VDS_1 None None putamen DNase [Search on ENCODE]
ENCSR621ENC_1 None None Retina DNase [Search on ENCODE]
ENCSR621ENC_2 None None Retina DNase [Search on ENCODE]
ENCSR621ENC_3 None None Retina DNase [Search on ENCODE]
ENCSR626RVD_1 None Neuron None DNase [Search on ENCODE]
ENCSR746ZPP_1 None iPSC None DNase [Search on ENCODE]
ENCSR754LIN_1 None Embryonic Stem Cell None DNase [Search on ENCODE]
ENCSR754LIN_2 None Embryonic Stem Cell None DNase [Search on ENCODE]
ENCSR820ICX_1 None None Retina DNase [Search on ENCODE]
ENCSR829MXU_1 None None Pons DNase [Search on ENCODE]
ENCSR829MXU_2 None None Pons DNase [Search on ENCODE]
ENCSR943SYS_1 None Embryonic Stem Cell None DNase [Search on ENCODE]
ENCSR964WHY_2 None Embryonic Stem Cell None DNase [Search on ENCODE]
ENCSR986YWZ_1 None None inferior parietal cortex DNase [Search on ENCODE]
GSM2386583 H1 Embryonic Stem Cell Embryo ATAC-seq [Search on ENCODE]
GSM2386582 H1 Embryonic Stem Cell Embryo ATAC-seq [Search on ENCODE]
GSM2406693 None Glioblastoma None ATAC-seq [Search on ENCODE]
GSM2579551 None MGE organoids None ATAC-seq [Search on ENCODE]
GSM2579552 None Cortex None ATAC-seq [Search on ENCODE]
GSM1820087 None Cortical Neuron None ATAC-seq [Search on ENCODE]
GSM2264823 None hESC None ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.