Home
Virus
Gene
Disease
Dataset
Download
Help
 
HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 31027933-31027934 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1032075 SEM Pre-B Lymphocyte None RUNX1 [Search on ENCODE]
GSM935493 HepG2 Epithelium Liver CEBPB [Search on ENCODE]
GSM935519 IMR90 Fibroblast Lung CEBPB [Search on ENCODE]
GSM935499 K562 Erythroblast Bone Marrow CEBPB [Search on ENCODE]
GSM1010881 GM12878 B Lymphocyte Blood NFIC [Search on ENCODE]
GSM1164147 DU145 Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1684642 None Mesenchymal Stem Cell None CEBPB [Search on ENCODE]
GSM791412 LS180 Epithelium Colon CEBPB [Search on ENCODE]
ENCSR416QLJ_1 K562 Erythroblast Bone Marrow CEBPB [Search on ENCODE]
ENCSR416QLJ_2 K562 Erythroblast Bone Marrow CEBPB [Search on ENCODE]
ENCSR620VIC_1 K562 Erythroblast Bone Marrow CEBPG [Search on ENCODE]
ENCSR620VIC_2 K562 Erythroblast Bone Marrow CEBPG [Search on ENCODE]
GSM2330565 SUM159PT None Breast CEBPB [Search on ENCODE]
GSM2401447 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2977504 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM722423 U937 None Pleura CEBPA [Search on ENCODE]
GSM722424 U937 None Pleura CEBPA [Search on ENCODE]
GSM2977503 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.