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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 246774655-246775525 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM759665 LNCaP Epithelium Prostate H3K4me2 [Search on ENCODE]
GSM686932 LNCaP Epithelium Prostate H3K4me2 [Search on ENCODE]
GSM503904 LNCaP Epithelium Prostate H3K4me2 [Search on ENCODE]
GSM503903 LNCaP Epithelium Prostate H3K4me2 [Search on ENCODE]
GSM353635 LNCaP Epithelium Prostate H3K4me2 [Search on ENCODE]
GSM969568 LNCaP-abl Epithelium Prostate H3K4me2 [Search on ENCODE]
GSM1058772 None Epithelium Fetal Small Intestine H3K36me3 [Search on ENCODE]
GSM1233900 GM12878 B Lymphocyte Blood H3K36me3 [Search on ENCODE]
GSM1234000 GM18505 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1249447 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1249448 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1252276 None None Stomach H3K36me3 [Search on ENCODE]
GSM1252280 None None Stomach H3K36me3 [Search on ENCODE]
GSM1252284 None None Stomach H3K36me3 [Search on ENCODE]
GSM1252305 None None Stomach H3K4me3 [Search on ENCODE]
GSM1252306 None None Stomach H3K4me3 [Search on ENCODE]
GSM1340259 C4-2 Epithelium None H3K4me1 [Search on ENCODE]
GSM1841289 RS4 B Lymphocyte None H3K4me1 [Search on ENCODE]
GSM1841300 RS4 B Lymphocyte None H3K4me1 [Search on ENCODE]
GSM1679101 LNCaP-abl Epithelium Prostate H3K4me2 [Search on ENCODE]
GSM1679102 LNCaP-abl Epithelium Prostate H3K4me2 [Search on ENCODE]
GSM1862993 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1862998 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1862999 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1863002 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1902615 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM818034 H1 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM2080913 C4-2B Epithelium Prostate H3K27ac [Search on ENCODE]
GSM772814 None None Cord blood H3K36me3 [Search on ENCODE]
GSM1907214 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1907213 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1844449 Kasumi-1 Myeloblast Blood H3K4me2 [Search on ENCODE]
GSM1868869 C4-2B Epithelium Prostate H3K4me2 [Search on ENCODE]
GSM2058766 LNCaP Epithelium Prostate H3K4me2 [Search on ENCODE]
GSM2058753 LNCaP Epithelium Prostate H3K4me2 [Search on ENCODE]
GSM1891831 LNCaP Epithelium Prostate H3K4me2 [Search on ENCODE]
GSM2120705 SH-SY5Y Neuroblastoma cell None H3K4me1 [Search on ENCODE]
GSM2037510 None None Gastric Primary Sample H3K4me3 [Search on ENCODE]
GSM2037497 None None Gastric Primary Sample H3K4me3 [Search on ENCODE]
GSM2279071 Jurkat T Lymphocyte Blood H3K27me3 [Search on ENCODE]
GSM1907212 LNCaP Epithelium Prostate H3K4me3 [Search on ENCODE]
GSM1907211 LNCaP Epithelium Prostate H3K4me3 [Search on ENCODE]
GSM1907209 LNCaP Epithelium Prostate H3K4me1 [Search on ENCODE]
GSM466737 H1 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.