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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 246774655-246775525 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1014539 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1255263 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1255266 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1255267 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1255268 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1255269 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1255270 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1255275 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1255277 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1255278 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1255279 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1255283 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1024772 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1024771 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM736565 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM736603 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM2186481 LNCaP Epithelium Prostate ATAC-seq [Search on ENCODE]
GSM2186477 LNCaP Epithelium Prostate ATAC-seq [Search on ENCODE]
GSM2186476 LNCaP Epithelium Prostate ATAC-seq [Search on ENCODE]
GSM816634 LNCaP Epithelium Prostate DNase [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.