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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 28029083-28029084 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1033761 None Plasma Cell None MED1 [Search on ENCODE]
GSM1070124 MM1.S B Lymphocyte Blood BRD4 [Search on ENCODE]
GSM1038273 MM1.S B Lymphocyte Blood BRD4 [Search on ENCODE]
GSM999792 None Leiomyoma Cell None PR [Search on ENCODE]
GSM1195560 None B Lymphocyte Blood IRF4 [Search on ENCODE]
GSM1195556 None B Lymphocyte Blood MED1 [Search on ENCODE]
GSM1234237 MS1 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1291199 None None Cord blood TAL1 [Search on ENCODE]
GSM1003626 SK-N-SH Neuroblastoma cell Brain EP300 [Search on ENCODE]
GSM1010858 SK-N-SH Neuroblastoma cell Brain TEAD4 [Search on ENCODE]
GSM1010887 SK-N-SH Neuroblastoma cell Brain PBX3 [Search on ENCODE]
GSM1010738 SK-N-SH Neuroblastoma cell Brain GATA3 [Search on ENCODE]
GSM1010900 SK-N-SH Neuroblastoma cell Brain TCF12 [Search on ENCODE]
GSM1542532 NCI-H2052 Epithelium Lung YAP1 [Search on ENCODE]
GSM1542533 NCI-H2052 Epithelium Lung YAP1 [Search on ENCODE]
ENCSR224QDY_2 HEK293 Epithelium Embryonic Kidney ZNF121 [Search on ENCODE]
GSM2302869 MM1.S B Lymphocyte Blood HDAC1 [Search on ENCODE]
GSM2436677 A673 Polygonal Muscle FLI1 [Search on ENCODE]
GSM2436676 A673 Polygonal Muscle FLI1 [Search on ENCODE]
GSM2430676 BJ Fibroblast Skin GATA4 [Search on ENCODE]
GSM2550195 None Progenitor Cells None EP300 [Search on ENCODE]
GSM2550258 None Fibroblast None EP300 [Search on ENCODE]
GSM2394424 JHU-06 Endothelial Cell None RELA [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.