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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 28029083-28029084 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM646565 None Epithelium None DNase [Search on ENCODE]
GSM646560 None Epithelium Amnion DNase [Search on ENCODE]
GSM646570 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM878645 None None Fetal Skin Biceps Left DNase [Search on ENCODE]
GSM878636 None None Fetal Skin Abdomen DNase [Search on ENCODE]
GSM878623 None Fibroblast Fetal Skin Back DNase [Search on ENCODE]
GSM878624 None Fibroblast Fetal Skin Back DNase [Search on ENCODE]
GSM878648 None None Fetal Skin Quadriceps Left DNase [Search on ENCODE]
GSM878639 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM878642 None None Fetal Skin Biceps Right DNase [Search on ENCODE]
GSM878647 None None Fetal Skin Quadriceps Right DNase [Search on ENCODE]
GSM878649 None None Fetal Skin Quadriceps Left DNase [Search on ENCODE]
GSM878641 None None Fetal Skin Upper Back DNase [Search on ENCODE]
GSM878635 None None Fetal Skin Abdomen DNase [Search on ENCODE]
GSM878643 None None Fetal Skin Biceps Right DNase [Search on ENCODE]
GSM1014510 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM1014528 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM1014529 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM1014518 None Embryonic Fibroblast Heart DNase [Search on ENCODE]
GSM1014532 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM1014533 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM1014508 HA-sp Astrocyte Spinal Cord DNase [Search on ENCODE]
GSM1014519 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM1014527 AG10803 Fibroblast Skin DNase [Search on ENCODE]
GSM1014515 None Myocyte Heart DNase [Search on ENCODE]
GSM1014530 None Fibroblast Heart DNase [Search on ENCODE]
GSM1014520 None Epithelium None DNase [Search on ENCODE]
GSM723024 IMR90 Fibroblast Lung DNase [Search on ENCODE]
GSM849031 None Fibroblast Pulmonary Artery DNase [Search on ENCODE]
GSM849029 None Fibroblast Umbilical Vein DNase [Search on ENCODE]
GSM849026 None Astrocyte Brain DNase [Search on ENCODE]
GSM1220605 None Fibroblast Fetal Skin Back DNase [Search on ENCODE]
GSM1220606 None Fibroblast Fetal Skin Scalp DNase [Search on ENCODE]
GSM1220607 None None Fetal Skin Abdomen DNase [Search on ENCODE]
GSM1220608 None None Fetal Skin Upper Back DNase [Search on ENCODE]
GSM1220609 None None Fetal Skin Biceps Right DNase [Search on ENCODE]
GSM1220610 None None Fetal Skin Quadriceps Right DNase [Search on ENCODE]
GSM1338308 None Fibroblast None DNase [Search on ENCODE]
GSM1338309 None Fibroblast None DNase [Search on ENCODE]
GSM1338310 None Fibroblast None DNase [Search on ENCODE]
GSM736518 BJ Fibroblast Skin DNase [Search on ENCODE]
GSM736494 None Embryonic Fibroblast Heart DNase [Search on ENCODE]
GSM736523 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736521 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736571 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736599 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736591 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736577 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736573 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736611 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736542 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736555 None Fibroblast Pulmonary Artery DNase [Search on ENCODE]
GSM736618 None Endothelial Cell Kidney DNase [Search on ENCODE]
GSM736560 None Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM736575 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736534 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM763534 BJ Fibroblast Skin DNase [Search on ENCODE]
GSM1662258 None Fibroblast None ATAC-seq [Search on ENCODE]
ENCSR405TXU_1 None Adipocyte None DNase [Search on ENCODE]
ENCSR512CWR None None Umbilical Cord DNase [Search on ENCODE]
ENCSR548MMD_1 BJ Fibroblast Skin DNase [Search on ENCODE]
ENCSR818JGZ_1 None None Limb DNase [Search on ENCODE]
GSM2174882 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174880 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174879 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174878 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174876 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174875 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2241148 T47D Epithelium Mammary Gland ATAC-seq [Search on ENCODE]
GSM2241147 T47D Epithelium Mammary Gland ATAC-seq [Search on ENCODE]
GSM1876025 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876024 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876027 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876026 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876021 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876023 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876022 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876028 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM2401442 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2401443 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2898847 None Cardiomyocyte None ATAC-seq [Search on ENCODE]
GSM2898851 None Cardiomyocyte None ATAC-seq [Search on ENCODE]
GSM2430672 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.