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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 26120544-26120545 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM894076 P493-6 B cell lymphoma None MAX [Search on ENCODE]
GSM894074 P493-6 B cell lymphoma None MAX [Search on ENCODE]
GSM776558 None Th1 None GATA3 [Search on ENCODE]
GSM776559 None Th2 None GATA3 [Search on ENCODE]
GSM1033756 None Plasma Cell None CDK9 [Search on ENCODE]
GSM894108 MM1.S B Lymphocyte Blood MYC [Search on ENCODE]
GSM1233991 GM18486 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234120 GM19239 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234160 GM2255 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234196 GM2610 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234237 MS1 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM803523 K562 Erythroblast Bone Marrow MAX [Search on ENCODE]
GSM2176976 None Th1 None T [Search on ENCODE]
GSM2176974 None Th1 None T [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.