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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 10280459-10281096 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM768310 H9 Embryonic Stem Cell Embryo FOXP1 [Search on ENCODE]
GSM730704 None Endothelial Cell Umbilical Vein FOS [Search on ENCODE]
GSM820437 HeLa Epithelium Cervix TERC [Search on ENCODE]
GSM935442 GM12878 B Lymphocyte Blood IKZF1 [Search on ENCODE]
GSM935375 GM12878 B Lymphocyte Blood EBF1 [Search on ENCODE]
GSM935585 None Endothelial Cell Umbilical Vein FOS [Search on ENCODE]
GSM1003632 SK-N-SH Neuroblastoma cell Brain JUND [Search on ENCODE]
GSM803349 GM12878 B Lymphocyte Blood REST [Search on ENCODE]
GSM1010893 GM12878 B Lymphocyte Blood RUNX3 [Search on ENCODE]
GSM1010840 SK-N-SH Neuroblastoma cell Brain FOSL2 [Search on ENCODE]
GSM1010750 SK-N-SH Neuroblastoma cell Brain FOXM1 [Search on ENCODE]
GSM1010901 SK-N-SH Neuroblastoma cell Brain JUND [Search on ENCODE]
GSM1010817 SK-N-SH Neuroblastoma cell Brain POLR2A [Search on ENCODE]
GSM1010763 SK-N-SH Neuroblastoma cell Brain EP300 [Search on ENCODE]
GSM1010900 SK-N-SH Neuroblastoma cell Brain TCF12 [Search on ENCODE]
GSM1336148 None Keratinocyte None SNAI2 [Search on ENCODE]
GSM1289416 IMR90 Fibroblast Lung LMNB1 [Search on ENCODE]
GSM1503215 None None Coronary artery smooth muscle TCF21 [Search on ENCODE]
GSM1503219 None None Coronary artery smooth muscle JUN [Search on ENCODE]
GSM1503220 None None Coronary artery smooth muscle JUND [Search on ENCODE]
GSM1330728 MRC5 Fibroblast Lung POLR2A [Search on ENCODE]
GSM1825746 None Fibroblast None T [Search on ENCODE]
GSM1859072 None Th1 None MAF [Search on ENCODE]
ENCSR897MMC_1 GM12878 B Lymphocyte Blood JUNB [Search on ENCODE]
GSM1904597 None Cortex Embryonic Kidney SIX2 [Search on ENCODE]
GSM1970531 None Cortex Kidney SIX2 [Search on ENCODE]
GSM1970530 None Cortex Kidney SIX2 [Search on ENCODE]
GSM2519945 None None Muscle NR3C1 [Search on ENCODE]
GSM2519947 None None Muscle NR3C1 [Search on ENCODE]
GSM2519949 None None Muscle NR3C1 [Search on ENCODE]
GSM2401467 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2394414 JHU-06 Endothelial Cell None JUN [Search on ENCODE]
GSM2394415 JHU-06 Endothelial Cell None JUN [Search on ENCODE]
GSM2436677 A673 Polygonal Muscle FLI1 [Search on ENCODE]
GSM2436676 A673 Polygonal Muscle FLI1 [Search on ENCODE]
GSM2576176 JHU-06 Endothelial Cell None JUN [Search on ENCODE]
GSM2977490 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2430675 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2977503 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.