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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 1309564-1309565 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM614610 MCF-7 Epithelium Breast ESR1 [Search on ENCODE]
GSM589237 MCF-7 Epithelium Breast ESR1 [Search on ENCODE]
GSM820431 HeLa Epithelium Cervix TERC [Search on ENCODE]
GSM820438 HeLa Epithelium Cervix TERC [Search on ENCODE]
GSM986064 MCF-7 Epithelium Breast ESR1 [Search on ENCODE]
GSM986063 MCF-7 Epithelium Breast ESR1 [Search on ENCODE]
GSM1187116 MCF-7 Epithelium Breast ESR1 [Search on ENCODE]
GSM1187117 MCF-7 Epithelium Breast ESR1 [Search on ENCODE]
GSM1231605 U2OS None Bone POLR2A [Search on ENCODE]
GSM1231606 U2OS None Bone POLR2A [Search on ENCODE]
ENCSR004GKA_1 K562 Erythroblast Bone Marrow ZEB2 [Search on ENCODE]
ENCSR076EZB_2 HEK293 Epithelium Embryonic Kidney KLF9 [Search on ENCODE]
ENCSR413ABE_2 HEK293 Epithelium Embryonic Kidney ZFP2 [Search on ENCODE]
ENCSR468LUO_2 MCF-7 Epithelium Breast SIN3A [Search on ENCODE]
ENCSR882ZTS_1 HEK293 Epithelium Embryonic Kidney ZBTB11 [Search on ENCODE]
ENCSR882ZTS_2 HEK293 Epithelium Embryonic Kidney ZBTB11 [Search on ENCODE]
GSM2026792 HEK293 Epithelium Embryonic Kidney MAZ [Search on ENCODE]
GSM631465 MCF-7 Epithelium Breast ESR1 [Search on ENCODE]
GSM1919986 CFPAC-1 None Pancreatic ductal ELF3 [Search on ENCODE]
GSM1574278 PANC-1 None Pancreatic ductal ZEB1 [Search on ENCODE]
GSM1574273 CFPAC-1 None Pancreatic ductal ELF3 [Search on ENCODE]
GSM1863077 293T None None TET2 [Search on ENCODE]
GSM2104436 HeLa Epithelium Cervix MBD3 [Search on ENCODE]
GSM641426 U2OS None Bone ESR1 [Search on ENCODE]
GSM2305320 None Patient None ESR1 [Search on ENCODE]
GSM2476830 T47D None None T [Search on ENCODE]
GSM2467223 MCF-7 None Mammary Gland ESR1 [Search on ENCODE]
GSM1556187 RKO Epithelium Colon BRPF3 [Search on ENCODE]
GSM2257572 HeLa Epithelium Cervix POLR2A [Search on ENCODE]
GSM818282 RKO Epithelium Colon KAT7 [Search on ENCODE]
GSM2467780 MCF-10A Epithelium Breast POLR2A [Search on ENCODE]
GSM2360622 MDA-231 Epithelium Mammary Gland ZEB1 [Search on ENCODE]
GSM2752897 AGS gastric cancer cell line None FXR1 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.