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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 35943038-35943039 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1032075 SEM Pre-B Lymphocyte None RUNX1 [Search on ENCODE]
GSM585590 SKNO-1 Myeloblast Bone Marrow ERG [Search on ENCODE]
GSM1082309 Kasumi-1 Myeloblast Blood TCF7L1 [Search on ENCODE]
GSM1233911 GM12878 B Lymphocyte Blood STAG1 [Search on ENCODE]
GSM1233913 GM12878 B Lymphocyte Blood STAG1 [Search on ENCODE]
GSM1233953 GM12891 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233991 GM18486 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234098 GM19238 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234119 GM19239 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234179 GM2588 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234237 MS1 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234238 MS1 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM468203 None Promyelocytic cell Bone Marrow PML [Search on ENCODE]
GSM935526 GM12891 Lymphoblastoid Blood RELA [Search on ENCODE]
GSM803538 GM12878 B Lymphocyte Blood BATF [Search on ENCODE]
GSM1010881 GM12878 B Lymphocyte Blood NFIC [Search on ENCODE]
GSM803362 GM12878 B Lymphocyte Blood PAX5 [Search on ENCODE]
GSM803496 GM12878 B Lymphocyte Blood ELF1 [Search on ENCODE]
GSM1010893 GM12878 B Lymphocyte Blood RUNX3 [Search on ENCODE]
GSM803391 GM12878 B Lymphocyte Blood PAX5 [Search on ENCODE]
GSM1010760 GM12878 B Lymphocyte Blood CREB1 [Search on ENCODE]
GSM1010729 GM12878 B Lymphocyte Blood MTA3 [Search on ENCODE]
GSM803397 GM12891 Lymphoblastoid Blood POU2F2 [Search on ENCODE]
GSM803334 GM12892 Lymphoblastoid Blood PAX5 [Search on ENCODE]
GSM1334005 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM1334006 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM1288792 None Hematopoietic Stem Cell None TRIM28 [Search on ENCODE]
GSM1893926 MOLM-14 Myeloid Cell None CDK8 [Search on ENCODE]
GSM1893928 MOLM-14 Myeloid Cell None CDK8 [Search on ENCODE]
GSM1859069 None Th1 None MYB [Search on ENCODE]
ENCSR199WXF_1 GM12878 B Lymphocyte Blood EED [Search on ENCODE]
ENCSR263DFP_2 K562 Erythroblast Bone Marrow PBX2 [Search on ENCODE]
ENCSR278SQL_1 GM12878 B Lymphocyte Blood NBN [Search on ENCODE]
ENCSR372GIN_1 GM12878 B Lymphocyte Blood CBX5 [Search on ENCODE]
ENCSR412QBS_1 GM12878 B Lymphocyte Blood TARDBP [Search on ENCODE]
ENCSR897MMC_1 GM12878 B Lymphocyte Blood JUNB [Search on ENCODE]
ENCSR897MMC_2 GM12878 B Lymphocyte Blood JUNB [Search on ENCODE]
GSM2026815 HEK293 Epithelium Embryonic Kidney ZNF770 [Search on ENCODE]
GSM1681426 None Macrophage Blood SPI1 [Search on ENCODE]
GSM803509 GM12878 B Lymphocyte Blood BCLAF1 [Search on ENCODE]
GSM2026052 Kasumi-1 Acute myeloid leukemia None ERG [Search on ENCODE]
GSM2026051 Kasumi-1 Acute myeloid leukemia None FLI1 [Search on ENCODE]
GSM2176976 None Th1 None T [Search on ENCODE]
GSM2176974 None Th1 None T [Search on ENCODE]
GSM2405928 MV4;11 Acute myeloid leukemia None CDK9 [Search on ENCODE]
GSM2574796 GM12878 B Lymphocyte Blood ETV6 [Search on ENCODE]
GSM2574790 GM12878 B Lymphocyte Blood ZMYM3 [Search on ENCODE]
GSM2574774 GM12878 B Lymphocyte Blood ZMYM3 [Search on ENCODE]
GSM2466688 DU-528 None Blood MYB [Search on ENCODE]
GSM2466559 293T None None ZNF441 [Search on ENCODE]
GSM2643541 LCL Lymphoblastoid Blood BRD4 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.