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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 35943038-35943039 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM530658 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM530657 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM493386 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM493384 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM1036373 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM1036372 None Natural Killer Cell Blood DNase [Search on ENCODE]
GSM1059529 None None Cord blood DNase [Search on ENCODE]
GSM646568 GM06990 B Lymphocyte Blood DNase [Search on ENCODE]
GSM646569 None Th1 None DNase [Search on ENCODE]
GSM736513 None Monocyte Blood DNase [Search on ENCODE]
GSM1102737 None T Lymphocyte Cord blood DNase [Search on ENCODE]
GSM1102736 None Monocyte Blood DNase [Search on ENCODE]
GSM1014523 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM1014537 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM1014526 GM12865 B Lymphocyte Blood DNase [Search on ENCODE]
GSM1014525 None B Lymphocyte Blood DNase [Search on ENCODE]
GSM1014522 None Th2 None DNase [Search on ENCODE]
GSM1014521 None Th2 None DNase [Search on ENCODE]
GSM1014540 None Th1 None DNase [Search on ENCODE]
GSM723022 None Haematopoietic Progenitor Cell Cord blood DNase [Search on ENCODE]
GSM1220604 None B Lymphocyte Spleen DNase [Search on ENCODE]
GSM1024765 None B Lymphocyte Blood DNase [Search on ENCODE]
GSM1024766 None B Lymphocyte Blood DNase [Search on ENCODE]
GSM1024770 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM1024791 None Monocyte Blood DNase [Search on ENCODE]
GSM1024760 None Th1 Blood DNase [Search on ENCODE]
GSM736592 None Th1 Blood DNase [Search on ENCODE]
GSM1024749 None Th1 Blood DNase [Search on ENCODE]
GSM1024792 None Th2 Blood DNase [Search on ENCODE]
GSM1024739 None Th2 Blood DNase [Search on ENCODE]
GSM1024744 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM1024741 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM1581820 None Stem cell Blood DNase [Search on ENCODE]
GSM1581821 None Myeloid Cell None DNase [Search on ENCODE]
GSM1581822 None Myeloid Cell None DNase [Search on ENCODE]
GSM1581823 None Myeloid Cell None DNase [Search on ENCODE]
GSM1581824 None Myeloid Cell None DNase [Search on ENCODE]
GSM1581825 None Myeloid Cell None DNase [Search on ENCODE]
GSM1581826 None Myeloid Cell None DNase [Search on ENCODE]
GSM1581829 None Myeloid Cell None DNase [Search on ENCODE]
GSM1581830 None Myeloid Cell None DNase [Search on ENCODE]
GSM1581831 None Myeloid Cell None DNase [Search on ENCODE]
GSM1581833 None Myeloid Cell None DNase [Search on ENCODE]
GSM1581836 None Myeloid Cell None DNase [Search on ENCODE]
GSM1565734 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM1565735 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM1832753 None B Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM1832754 None B Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM1832755 None B Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM1832757 None B Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM1832758 None B Lymphocyte Blood ATAC-seq [Search on ENCODE]
ENCSR148VUP_2 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
ENCSR426IEA_1 KBM-7 Myeloblast Blood DNase [Search on ENCODE]
ENCSR426IEA_2 KBM-7 Myeloblast Blood DNase [Search on ENCODE]
ENCSR215FCQ_1 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
ENCSR373BIX_2 None Dendritic Cell None DNase [Search on ENCODE]
GSM1972144 GM12878 B Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM2243040 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM2243039 None Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2243038 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM2243037 None Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2243034 Gen2.2 Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2243033 CAL-1 Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2695561 K562 Erythroblast Bone Marrow ATAC-seq [Search on ENCODE]
GSM2679887 None Monocyte Blood ATAC-seq [Search on ENCODE]
GSM2326844 None t(3;21) paitent None DNase [Search on ENCODE]
GSM2326845 None Plasmablast None DNase [Search on ENCODE]
GSM2326846 SKH1 SKH-1 cells None DNase [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.