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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 23756637-23756914 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM730704 None Endothelial Cell Umbilical Vein FOS [Search on ENCODE]
GSM610337 K562 Erythroblast Bone Marrow FOS [Search on ENCODE]
GSM610336 K562 Erythroblast Bone Marrow FOS [Search on ENCODE]
GSM487426 K562 Erythroblast Bone Marrow FOS [Search on ENCODE]
GSM487425 K562 Erythroblast Bone Marrow JUN [Search on ENCODE]
GSM610334 K562 Erythroblast Bone Marrow RUNX1 [Search on ENCODE]
GSM894077 U87 None Brain MAX [Search on ENCODE]
GSM1032075 SEM Pre-B Lymphocyte None RUNX1 [Search on ENCODE]
GSM1067276 None Erythroid Cell None NFE2 [Search on ENCODE]
GSM934617 LX2 Hepatic Stellate Cell None VDR [Search on ENCODE]
GSM934612 LX2 Hepatic Stellate Cell None VDR [Search on ENCODE]
GSM934614 LX2 Hepatic Stellate Cell None VDR [Search on ENCODE]
GSM935328 HeLa-S3 Epithelium Cervix JUND [Search on ENCODE]
GSM935341 HeLa-S3 Epithelium Cervix JUN [Search on ENCODE]
GSM935649 HepG2 Epithelium Liver JUND [Search on ENCODE]
GSM935364 HepG2 Epithelium Liver JUN [Search on ENCODE]
GSM935585 None Endothelial Cell Umbilical Vein FOS [Search on ENCODE]
GSM1003614 IMR90 Fibroblast Lung MXI1 [Search on ENCODE]
GSM935411 K562 Erythroblast Bone Marrow JUN [Search on ENCODE]
GSM935569 K562 Erythroblast Bone Marrow JUND [Search on ENCODE]
GSM1003609 K562 Erythroblast Bone Marrow JUN [Search on ENCODE]
GSM935467 K562 Erythroblast Bone Marrow JUN [Search on ENCODE]
GSM935602 K562 Erythroblast Bone Marrow JUN [Search on ENCODE]
GSM935355 K562 Erythroblast Bone Marrow FOS [Search on ENCODE]
GSM1006877 MCF-7 Epithelium Breast MYC [Search on ENCODE]
GSM1006865 MCF-7 Epithelium Breast POLR2A [Search on ENCODE]
GSM935398 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM935396 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM935397 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM935438 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM1003632 SK-N-SH Neuroblastoma cell Brain JUND [Search on ENCODE]
GSM803500 HepG2 Epithelium Liver JUND [Search on ENCODE]
GSM803451 HepG2 Epithelium Liver FOSL2 [Search on ENCODE]
GSM803439 K562 Erythroblast Bone Marrow FOSL1 [Search on ENCODE]
GSM1010840 SK-N-SH Neuroblastoma cell Brain FOSL2 [Search on ENCODE]
GSM1010835 SK-N-SH Neuroblastoma cell Brain MAX [Search on ENCODE]
GSM1010901 SK-N-SH Neuroblastoma cell Brain JUND [Search on ENCODE]
GSM1010900 SK-N-SH Neuroblastoma cell Brain TCF12 [Search on ENCODE]
GSM803372 U87 None Brain REST [Search on ENCODE]
GSM1503219 None None Coronary artery smooth muscle JUN [Search on ENCODE]
GSM1503220 None None Coronary artery smooth muscle JUND [Search on ENCODE]
GSM1678029 PC-3 Epithelium Prostate DAXX [Search on ENCODE]
GSM1678030 PC-3 Epithelium Prostate DAXX [Search on ENCODE]
GSM1535709 HCT-116 None Colon HNF4A [Search on ENCODE]
GSM1614036 MDA-MB-231 Epithelium Breast JUN [Search on ENCODE]
GSM1700784 MDA-MB-231 Epithelium Breast JUN [Search on ENCODE]
GSM1700785 MDA-MB-231 Epithelium Breast JUN [Search on ENCODE]
GSM1700786 MDA-MB-231 Epithelium Breast JUN [Search on ENCODE]
GSM1891656 None Epithelium None NRF1 [Search on ENCODE]
GSM1891658 HCC1954 Epithelium Mammary Gland NRF1 [Search on ENCODE]
GSM1255433 None Melanocyte None RNF2 [Search on ENCODE]
ENCSR239ZLZ_1 K562 Erythroblast Bone Marrow FOSL1 [Search on ENCODE]
ENCSR239ZLZ_2 K562 Erythroblast Bone Marrow FOSL1 [Search on ENCODE]
ENCSR632DCH_2 K562 Erythroblast Bone Marrow ATF3 [Search on ENCODE]
GSM2026822 HEK293 Epithelium Embryonic Kidney ZNF554 [Search on ENCODE]
GSM501692 Saos-2 Osteosarcoma cell Bone TP53 [Search on ENCODE]
GSM1856030 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1081128 U2OS None Bone CLOCK [Search on ENCODE]
GSM1917770 HCT-116 Colon cancer cell Colon ATF3 [Search on ENCODE]
GSM777644 K562 Erythroblast Bone Marrow FOS [Search on ENCODE]
GSM777638 K562 Erythroblast Bone Marrow JUNB [Search on ENCODE]
GSM777639 K562 Erythroblast Bone Marrow JUND [Search on ENCODE]
GSM1897369 MV4-11 Leukemia Cell None KMT2A [Search on ENCODE]
GSM2687534 None Monocyte Blood RUNX1 [Search on ENCODE]
GSM2746540 SW480 None Colon TP53 [Search on ENCODE]
GSM2409676 TTC1240 None Malignant rhabdoid tumor SMARCB1 [Search on ENCODE]
GSM2394415 JHU-06 Endothelial Cell None JUN [Search on ENCODE]
GSM2371449 THP-1 Monocyte Blood VDR [Search on ENCODE]
GSM866198 HeLa-S3 Epithelium Cervix POLR2A [Search on ENCODE]
GSM2401453 BJ Fibroblast Skin GATA4 [Search on ENCODE]
GSM2430676 BJ Fibroblast Skin GATA4 [Search on ENCODE]
GSM2409708 TTC1240 None Malignant rhabdoid tumor SS18 [Search on ENCODE]
GSM2409700 None Embryonic Stem Cell epithelioid sarcoma SMARCB1 [Search on ENCODE]
GSM889428 SKBR-3 None Mammary Gland TFAP2C [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.