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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 23756637-23756914 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM521890 IMR90 Fibroblast Lung H3K36me3 [Search on ENCODE]
GSM521898 IMR90 Fibroblast Lung H3K4me1 [Search on ENCODE]
GSM706069 iPS DF 19.11 iPSC Foreskin H3K36me3 [Search on ENCODE]
GSM610339 K562 Erythroblast Bone Marrow H3K4me1 [Search on ENCODE]
GSM686936 LNCaP Epithelium Prostate H3K36me3 [Search on ENCODE]
GSM468201 NB4 Promyelocytic cell Blood H3K9me3 [Search on ENCODE]
GSM958159 None Keratinocyte Foreskin H3K36me3 [Search on ENCODE]
GSM910568 None None Stomach H3K36me3 [Search on ENCODE]
GSM910571 None None Spleen H3K36me3 [Search on ENCODE]
GSM910570 None None Pancreas H3K36me3 [Search on ENCODE]
GSM621693 None None Skeletal Muscle H3K36me3 [Search on ENCODE]
GSM621684 None None Skeletal Muscle H3K36me3 [Search on ENCODE]
GSM621461 None Adipocyte Adipose H3K36me3 [Search on ENCODE]
GSM621421 None None Duodenum Mucosa H3K36me3 [Search on ENCODE]
GSM621419 None Mesenchymal Stem Cell Bone Marrow H3K36me3 [Search on ENCODE]
GSM1203229 HKC8 Epithelium Kidney H3K27me3 [Search on ENCODE]
GSM534467 None Stromal Cell Adipose H3K4me1 [Search on ENCODE]
GSM670000 None Chondrocyte Cartilage H3K4me1 [Search on ENCODE]
GSM646380 None Epithelium Mammary Gland H3K4me1 [Search on ENCODE]
GSM621418 None Adipocyte Adipose H3K4me1 [Search on ENCODE]
GSM613876 None Epithelium Mammary Gland H3K4me1 [Search on ENCODE]
GSM956012 H1 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM1013141 H1 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM1013142 None None Thymus H3K36me3 [Search on ENCODE]
GSM1058772 None Epithelium Fetal Small Intestine H3K36me3 [Search on ENCODE]
GSM1112794 None Mesenchymal Stem Cell Bone Marrow H3K27ac [Search on ENCODE]
GSM669990 None Chondrocyte Cartilage H3K4me3 [Search on ENCODE]
GSM1160196 None None Fetal Adrenal Gland H3K36me3 [Search on ENCODE]
GSM1127070 UCSF-4* Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM1127180 None None Stomach H3K36me3 [Search on ENCODE]
GSM1055820 IMR90 Fibroblast Lung H3K36me3 [Search on ENCODE]
GSM945207 BJ Fibroblast Skin H3K36me3 [Search on ENCODE]
GSM1003463 DND-41 T Lymphocyte Blood H3K36me3 [Search on ENCODE]
GSM945212 GM12878 B Lymphocyte Blood H3K36me3 [Search on ENCODE]
GSM945184 H7 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM733705 None Epithelium Mammary Gland H3K4me1 [Search on ENCODE]
GSM945233 None Endothelial Cell Umbilical Vein H3K36me3 [Search on ENCODE]
GSM1003526 NHDF-Ad Fibroblast Skin H3K4me1 [Search on ENCODE]
GSM1252276 None None Stomach H3K36me3 [Search on ENCODE]
GSM1252280 None None Stomach H3K36me3 [Search on ENCODE]
GSM1252284 None None Stomach H3K36me3 [Search on ENCODE]
GSM1252292 None None Stomach H3K36me3 [Search on ENCODE]
GSM1252296 None None Stomach H3K36me3 [Search on ENCODE]
GSM1252308 None None Stomach H3K4me3 [Search on ENCODE]
GSM1252324 None None Stomach H3K27ac [Search on ENCODE]
GSM1369953 None Epithelium None H3K36me3 [Search on ENCODE]
GSM1399017 None Multiple myeloma None H3K36me3 [Search on ENCODE]
GSM1435528 None Fibroblast None H3K4me1 [Search on ENCODE]
GSM1418961 IMR90 Fibroblast Lung H3K4me1 [Search on ENCODE]
GSM1418962 IMR90 Fibroblast Lung H3K4me1 [Search on ENCODE]
GSM1526934 IMR90 Fibroblast Lung H3K4me2 [Search on ENCODE]
GSM1663028 FT33 Epithelium Fallopian tube secretory H3K4me1 [Search on ENCODE]
GSM1663029 FT33 Epithelium Fallopian tube secretory H3K4me1 [Search on ENCODE]
GSM1663037 IOE11 Epithelium Ovary H3K4me1 [Search on ENCODE]
GSM1866128 None None Brain H3K4me1 [Search on ENCODE]
GSM1922388 IMR90 Fibroblast Lung H3K36me3 [Search on ENCODE]
GSM1679107 LNCaP-abl Epithelium Prostate H3K36me3 [Search on ENCODE]
GSM1679108 LNCaP-abl Epithelium Prostate H3K36me3 [Search on ENCODE]
GSM1666386 NHEK Keratinocyte Skin H3K27ac [Search on ENCODE]
GSM752973 H1 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM753432 H1 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM753437 H1 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM767341 H1 Embryonic Stem Cell Embryo H3K27ac [Search on ENCODE]
GSM767342 H1 Embryonic Stem Cell Embryo H3K27ac [Search on ENCODE]
GSM818034 H1 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM818035 H1 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM2037502 None None Gastric Primary Sample H3K27ac [Search on ENCODE]
GSM772748 None Mesenchymal Stem Cell Adipose H3K4me1 [Search on ENCODE]
GSM772768 None None Angular Gyrus H3K36me3 [Search on ENCODE]
GSM2483423 MCF-7 Epithelium Breast H3K27ac [Search on ENCODE]
GSM1855990 MDA-MB-231 Epithelium Mammary Gland H3K4me1 [Search on ENCODE]
GSM1574248 HPAF-II None Pancreatic ductal H3K4me1 [Search on ENCODE]
GSM1892603 None None FFPE H3K36me3 [Search on ENCODE]
GSM1666383 NHEK Keratinocyte Skin H3K4me1 [Search on ENCODE]
GSM2042910 HT29 colorectal adenocarcinoma None H3K36me3 [Search on ENCODE]
GSM2228905 None Keratinocyte Foreskin H3K36me3 [Search on ENCODE]
GSM2067531 786-O Epithelium Kidney H3K4me1 [Search on ENCODE]
GSM2067519 MCF-7 None Breast H3K4me1 [Search on ENCODE]
GSM2067518 MCF-7 None Breast H3K4me1 [Search on ENCODE]
GSM2067517 MCF-7 None Breast H3K4me1 [Search on ENCODE]
GSM2067516 MCF-7 None Breast H3K4me1 [Search on ENCODE]
GSM2247732 None Monocyte Blood H3K27me3 [Search on ENCODE]
GSM2279165 HEK293 Epithelium Embryonic Kidney H3K36me3 [Search on ENCODE]
GSM2279164 HEK293 Epithelium Embryonic Kidney H3K36me3 [Search on ENCODE]
GSM2279075 Jurkat T Lymphocyte Blood H3K27me3 [Search on ENCODE]
GSM2279073 Jurkat T Lymphocyte Blood H3K27me3 [Search on ENCODE]
GSM2279072 Jurkat T Lymphocyte Blood H3K27me3 [Search on ENCODE]
GSM2279071 Jurkat T Lymphocyte Blood H3K27me3 [Search on ENCODE]
GSM2279067 Jurkat T Lymphocyte Blood H3K4me2 [Search on ENCODE]
GSM2058081 V576 None None H3K4me1 [Search on ENCODE]
GSM2308931 None hTERT immortalized endometriosis cells None H3K4me1 [Search on ENCODE]
GSM2214106 Rh4 rhabdomyosarcoma None H3K36me3 [Search on ENCODE]
GSM1422917 None Melanocytic cell None H3K4me1 [Search on ENCODE]
GSM2309425 MDA-MB-231 mDA None H3K4me1 [Search on ENCODE]
GSM2309424 MDA-MB-231 mDA None H3K4me1 [Search on ENCODE]
GSM2723831 786-O Epithelium Kidney H3K4me1 [Search on ENCODE]
GSM1064373 None Epithelium None H3K4me1 [Search on ENCODE]
GSM2293425 None None Kidney H3K27ac [Search on ENCODE]
GSM773042 None Haematopoietic Progenitor Cell Cord blood H3K36me3 [Search on ENCODE]
GSM2498492 breast triple negative tumor cell line BCSC1 None Breast H3K9me3 [Search on ENCODE]
GSM2293339 A-498 None None H3K4me1 [Search on ENCODE]
GSM2293338 A-498 None None H3K27ac [Search on ENCODE]
GSM2293453 None None Clear cell renal cell carcinoma tumor H3K4me1 [Search on ENCODE]
GSM1914994 LM7 Osteosarcoma cell None H3K4me1 [Search on ENCODE]
GSM1915010 MNNG Osteosarcoma cell None H3K4me1 [Search on ENCODE]
GSM2723855 None Patient None H3K4me1 [Search on ENCODE]
GSM2476343 SKmel147 melanoma None H3K4me1 [Search on ENCODE]
GSM2476342 None Melanocyte Foreskin H3K4me1 [Search on ENCODE]
GSM2476345 SKmel239 melanoma None H3K4me1 [Search on ENCODE]
GSM2293334 786-O Epithelium Kidney H3K4me1 [Search on ENCODE]
GSM2309430 MDA-MB-231 mDA None H3K4me1 [Search on ENCODE]
GSM2309431 MDA-MB-231 mDA None H3K4me1 [Search on ENCODE]
GSM2723843 None Patient None H3K4me1 [Search on ENCODE]
GSM2723842 None Patient None H3K27ac [Search on ENCODE]
GSM2723862 None Patient None H3K27ac [Search on ENCODE]
GSM2723838 A-498 None None H3K27ac [Search on ENCODE]
GSM605309 H1 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM2293325 None None Clear cell renal cell carcinoma tumor H3K4me1 [Search on ENCODE]
GSM2258837 HCC1954 None Breast H3K4me1 [Search on ENCODE]
GSM875813 LNCaP Epithelium Prostate H3K36me3 [Search on ENCODE]
GSM875814 LNCaP Epithelium Prostate H3K36me3 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.