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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 27445513-27445514 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM798438 MCF-7 Epithelium Breast FOXA1 [Search on ENCODE]
GSM1153765 Mutu III B Lymphocyte None SND1 [Search on ENCODE]
GSM1233975 GM12892 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233992 GM18486 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234098 GM19238 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234214 GM2630 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234215 GM2630 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM935282 GM18505 Lymphoblastoid Blood RELA [Search on ENCODE]
GSM1010780 GM12878 B Lymphocyte Blood ATF2 [Search on ENCODE]
GSM1010731 GM12878 B Lymphocyte Blood FOXM1 [Search on ENCODE]
GSM803403 HepG2 Epithelium Liver FOXA2 [Search on ENCODE]
GSM803409 T47D Epithelium Mammary Gland FOXA1 [Search on ENCODE]
GSM1164145 DU145 Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1164146 DU145 Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1164147 DU145 Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1164148 DU145 Epithelium Prostate FOXA1 [Search on ENCODE]
GSM486458 GM18505 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM1068136 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1690058 OCI-Ly10 B Lymphocyte Bone Marrow FOXP1 [Search on ENCODE]
GSM803509 GM12878 B Lymphocyte Blood BCLAF1 [Search on ENCODE]
GSM2219866 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2219861 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM803432 HepG2 Epithelium Liver FOXA1 [Search on ENCODE]
GSM803461 HepG2 Epithelium Liver FOXA1 [Search on ENCODE]
GSM2432977 D-341 None None NEUROD1 [Search on ENCODE]
GSM2432967 D-341 None None OTX2 [Search on ENCODE]
GSM2432962 D-341 None None OTX2 [Search on ENCODE]
GSM2432958 D-341 None None OTX2 [Search on ENCODE]
GSM2432952 D-341 None None NEUROD1 [Search on ENCODE]
GSM2214116 Rh4 rhabdomyosarcoma None EP300 [Search on ENCODE]
GSM1970161 None Fibroblast Fetal Lung NEUROG2 [Search on ENCODE]
GSM1970159 None Fibroblast Fetal Lung NEUROG2 [Search on ENCODE]
GSM1970158 None Fibroblast Fetal Lung NEUROG2 [Search on ENCODE]
GSM1970156 None Fibroblast Fetal Lung NEUROG2 [Search on ENCODE]
GSM2401446 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2401447 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2401466 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2401467 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2401468 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2401469 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2977504 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2537229 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2537225 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2977490 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2430678 M.M. Fibroblast None FOXA2 [Search on ENCODE]
GSM2430675 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2977503 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2977502 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.