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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 27445513-27445514 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM665820 None Natural Killer Cell Blood DNase [Search on ENCODE]
GSM817213 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM1059533 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM646564 None Fibroblast Skin DNase [Search on ENCODE]
GSM646569 None Th1 None DNase [Search on ENCODE]
GSM909314 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM878622 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM817183 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM1014510 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM1014514 None Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM723021 None None Fetal Brain DNase [Search on ENCODE]
GSM774235 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM736567 NHDF-Ad Fibroblast Skin DNase [Search on ENCODE]
ENCSR759UNY_1 None None Tongue DNase [Search on ENCODE]
ENCSR559WMK None None Tongue DNase [Search on ENCODE]
ENCSR000FFJ SJCRH30 Fibroblast Muscle DNase [Search on ENCODE]
GSM2306502 None Treg cell None ATAC-seq [Search on ENCODE]
GSM2306498 None Th2 None ATAC-seq [Search on ENCODE]
GSM2257296 H7 Embryonic Stem Cell Embryo ATAC-seq [Search on ENCODE]
GSM1876022 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM2214102 Rh4 rhabdomyosarcoma None DNase [Search on ENCODE]
GSM2430668 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM822388 LNCaP Epithelium Prostate DNase [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.