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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 154213414-154213415 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM730704 None Endothelial Cell Umbilical Vein FOS [Search on ENCODE]
GSM730701 None Endothelial Cell Umbilical Vein GATA2 [Search on ENCODE]
GSM610337 K562 Erythroblast Bone Marrow FOS [Search on ENCODE]
GSM610336 K562 Erythroblast Bone Marrow FOS [Search on ENCODE]
GSM487426 K562 Erythroblast Bone Marrow FOS [Search on ENCODE]
GSM610335 K562 Erythroblast Bone Marrow GATA1 [Search on ENCODE]
GSM487425 K562 Erythroblast Bone Marrow JUN [Search on ENCODE]
GSM610334 K562 Erythroblast Bone Marrow RUNX1 [Search on ENCODE]
GSM838675 None Glioblastoma Multiforme Stem Like None ATF3 [Search on ENCODE]
GSM894077 U87 None Brain MAX [Search on ENCODE]
GSM894082 U87 None Brain MED1 [Search on ENCODE]
GSM935551 MCF-10A Epithelium Breast STAT3 [Search on ENCODE]
GSM991661 IMR90 Fibroblast Lung E2F7 [Search on ENCODE]
GSM1067275 None Erythroid Cell None KLF1 [Search on ENCODE]
GSM1067274 None Erythroid Cell None GATA1 [Search on ENCODE]
GSM1067276 None Erythroid Cell None NFE2 [Search on ENCODE]
GSM1195554 U87 None Brain POLR2A [Search on ENCODE]
GSM1195552 U87 None Brain BRD4 [Search on ENCODE]
GSM935500 HeLa-S3 Epithelium Cervix EP300 [Search on ENCODE]
GSM935328 HeLa-S3 Epithelium Cervix JUND [Search on ENCODE]
GSM935341 HeLa-S3 Epithelium Cervix JUN [Search on ENCODE]
GSM935649 HepG2 Epithelium Liver JUND [Search on ENCODE]
GSM935278 None Endothelial Cell Umbilical Vein JUN [Search on ENCODE]
GSM935347 None Endothelial Cell Umbilical Vein GATA2 [Search on ENCODE]
GSM935585 None Endothelial Cell Umbilical Vein FOS [Search on ENCODE]
GSM935519 IMR90 Fibroblast Lung CEBPB [Search on ENCODE]
GSM935403 IMR90 Fibroblast Lung MAFK [Search on ENCODE]
GSM1003612 IMR90 Fibroblast Lung RCOR1 [Search on ENCODE]
GSM935340 K562 Erythroblast Bone Marrow ATF1 [Search on ENCODE]
GSM935411 K562 Erythroblast Bone Marrow JUN [Search on ENCODE]
GSM935569 K562 Erythroblast Bone Marrow JUND [Search on ENCODE]
GSM935521 K562 Erythroblast Bone Marrow JUN [Search on ENCODE]
GSM1003609 K562 Erythroblast Bone Marrow JUN [Search on ENCODE]
GSM935439 K562 Erythroblast Bone Marrow RCOR1 [Search on ENCODE]
GSM935467 K562 Erythroblast Bone Marrow JUN [Search on ENCODE]
GSM935602 K562 Erythroblast Bone Marrow JUN [Search on ENCODE]
GSM935311 K562 Erythroblast Bone Marrow MAFK [Search on ENCODE]
GSM935355 K562 Erythroblast Bone Marrow FOS [Search on ENCODE]
GSM935457 MCF-10A Epithelium Breast STAT3 [Search on ENCODE]
GSM935398 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM935400 MCF-10A Epithelium Breast E2F4 [Search on ENCODE]
GSM935399 MCF-10A Epithelium Breast STAT3 [Search on ENCODE]
GSM935396 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM935397 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM935438 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM1010748 A549 Epithelium Lung FOSL2 [Search on ENCODE]
GSM1010756 HCT-116 None Colon FOSL1 [Search on ENCODE]
GSM1010847 HCT-116 None Colon JUND [Search on ENCODE]
GSM1010840 SK-N-SH Neuroblastoma cell Brain FOSL2 [Search on ENCODE]
GSM1010901 SK-N-SH Neuroblastoma cell Brain JUND [Search on ENCODE]
GSM1010763 SK-N-SH Neuroblastoma cell Brain EP300 [Search on ENCODE]
GSM1010887 SK-N-SH Neuroblastoma cell Brain PBX3 [Search on ENCODE]
GSM1010738 SK-N-SH Neuroblastoma cell Brain GATA3 [Search on ENCODE]
GSM1010900 SK-N-SH Neuroblastoma cell Brain TCF12 [Search on ENCODE]
GSM1164152 DU145 Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1246714 NCI-H441 Epithelium Lung SMAD3 [Search on ENCODE]
GSM1250896 AGS Epithelium Stomach GATA4 [Search on ENCODE]
GSM1250897 AGS Epithelium Stomach GATA6 [Search on ENCODE]
GSM1503219 None None Coronary artery smooth muscle JUN [Search on ENCODE]
GSM1503220 None None Coronary artery smooth muscle JUND [Search on ENCODE]
GSM1678029 PC-3 Epithelium Prostate DAXX [Search on ENCODE]
GSM1515741 SF268 None None TEAD1 [Search on ENCODE]
GSM1515742 SF268 None None TEAD1 [Search on ENCODE]
GSM1542532 NCI-H2052 Epithelium Lung YAP1 [Search on ENCODE]
GSM1542533 NCI-H2052 Epithelium Lung YAP1 [Search on ENCODE]
GSM1614036 MDA-MB-231 Epithelium Breast JUN [Search on ENCODE]
GSM1664955 MSTO None None TEAD1 [Search on ENCODE]
GSM1667161 HuCCT1 None None TEAD1 [Search on ENCODE]
GSM1700786 MDA-MB-231 Epithelium Breast JUN [Search on ENCODE]
GSM738818 PC-3 Epithelium Prostate JUND [Search on ENCODE]
ENCSR197WGI_1 IMR90 Fibroblast Lung NFE2L2 [Search on ENCODE]
ENCSR239ZLZ_1 K562 Erythroblast Bone Marrow FOSL1 [Search on ENCODE]
ENCSR239ZLZ_2 K562 Erythroblast Bone Marrow FOSL1 [Search on ENCODE]
ENCSR263DFP_2 K562 Erythroblast Bone Marrow PBX2 [Search on ENCODE]
ENCSR552YGL_2 K562 Erythroblast Bone Marrow NFE2 [Search on ENCODE]
ENCSR563GCV_3 A549 Epithelium Lung FOSL2 [Search on ENCODE]
ENCSR587OQL_1 K562 Erythroblast Bone Marrow SMARCA4 [Search on ENCODE]
ENCSR593DGU_1 A549 Epithelium Lung FOSL2 [Search on ENCODE]
ENCSR632DCH_1 K562 Erythroblast Bone Marrow ATF3 [Search on ENCODE]
ENCSR632DCH_2 K562 Erythroblast Bone Marrow ATF3 [Search on ENCODE]
ENCSR900RUE_2 A549 Epithelium Lung FOSL2 [Search on ENCODE]
ENCSR957KYB_1 IMR90 Fibroblast Lung BHLHE40 [Search on ENCODE]
GSM1856034 MDA-MB-231 Epithelium Mammary Gland SMARCA4 [Search on ENCODE]
GSM1856033 MDA-MB-231 Epithelium Mammary Gland SMARCA4 [Search on ENCODE]
GSM1856031 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1856030 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1856029 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1855971 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1855970 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1855969 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1855968 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1919987 CFPAC-1 None Pancreatic ductal FOXA1 [Search on ENCODE]
GSM1917774 HCT-116 Colon cancer cell Colon ATF3 [Search on ENCODE]
GSM1917770 HCT-116 Colon cancer cell Colon ATF3 [Search on ENCODE]
GSM2330593 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330590 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330589 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330583 SUM159PT Mammary carcinoma cell Breast EP300 [Search on ENCODE]
GSM2310996 A549 Epithelium Lung NKX2-1 [Search on ENCODE]
GSM777644 K562 Erythroblast Bone Marrow FOS [Search on ENCODE]
GSM777638 K562 Erythroblast Bone Marrow JUNB [Search on ENCODE]
GSM777639 K562 Erythroblast Bone Marrow JUND [Search on ENCODE]
GSM2501568 MDA-MB-231 None Breast TP53 [Search on ENCODE]
GSM2501567 MDA-MB-231 None Breast E2F1 [Search on ENCODE]
GSM2501565 MDA-MB-231 None Breast FOSL1 [Search on ENCODE]
GSM2550216 None Fibroblast None EP300 [Search on ENCODE]
GSM2550237 None Progenitor Cells None EP300 [Search on ENCODE]
GSM2635314 MG-63 Osteosarcoma cell None FOSL1 [Search on ENCODE]
GSM2635310 143B Osteosarcoma cell None FOSL1 [Search on ENCODE]
GSM2409694 None Embryonic Stem Cell epithelioid sarcoma SMARCA4 [Search on ENCODE]
GSM2519945 None None Muscle NR3C1 [Search on ENCODE]
GSM2519944 None None Muscle NR3C1 [Search on ENCODE]
GSM2401467 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2401468 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2409676 TTC1240 None Malignant rhabdoid tumor SMARCB1 [Search on ENCODE]
GSM2977504 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2394416 JHU-06 Endothelial Cell None JUNB [Search on ENCODE]
GSM2394414 JHU-06 Endothelial Cell None JUN [Search on ENCODE]
GSM2394415 JHU-06 Endothelial Cell None JUN [Search on ENCODE]
GSM2576177 JHU-06 Endothelial Cell None JUN [Search on ENCODE]
GSM2576176 JHU-06 Endothelial Cell None JUN [Search on ENCODE]
GSM2977490 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2430675 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2430676 BJ Fibroblast Skin GATA4 [Search on ENCODE]
GSM2550195 None Progenitor Cells None EP300 [Search on ENCODE]
GSM2977502 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2409708 TTC1240 None Malignant rhabdoid tumor SS18 [Search on ENCODE]
GSM2394422 JHU-06 Endothelial Cell None RELA [Search on ENCODE]
GSM2394421 JHU-06 Endothelial Cell None RELA [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.