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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 154213414-154213415 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM669898 HUES6 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM669932 HUES64 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM317595 None Proerythroblast Blood H3K36me3 [Search on ENCODE]
GSM621693 None None Skeletal Muscle H3K36me3 [Search on ENCODE]
GSM621684 None None Skeletal Muscle H3K36me3 [Search on ENCODE]
GSM621649 None None Fetal Stomach H3K36me3 [Search on ENCODE]
GSM621461 None Adipocyte Adipose H3K36me3 [Search on ENCODE]
GSM621421 None None Duodenum Mucosa H3K36me3 [Search on ENCODE]
GSM621415 None Epithelium Kidney H3K36me3 [Search on ENCODE]
GSM621387 None Epithelium Lung H3K36me3 [Search on ENCODE]
GSM873694 IMR90 Fibroblast Lung H3 [Search on ENCODE]
GSM537699 None Hepatocyte Liver H3K36me3 [Search on ENCODE]
GSM1058774 None T Lymphocyte Blood H3K36me3 [Search on ENCODE]
GSM772803 None Neuron None H3K36me3 [Search on ENCODE]
GSM1177767 U2OS None Bone H3K36me3 [Search on ENCODE]
GSM1233965 GM12892 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234033 GM18951 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234068 GM19193 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1254196 HBL1 B Lymphocyte Bone Marrow H3K27ac [Search on ENCODE]
GSM1314124 KOPT-K1 T Lymphocyte Blood H3K36me3 [Search on ENCODE]
GSM1314131 KOPT-K1 T Lymphocyte Blood H3K36me3 [Search on ENCODE]
GSM1314145 DND-41 T Lymphocyte Blood H3K36me3 [Search on ENCODE]
GSM1003463 DND-41 T Lymphocyte Blood H3K36me3 [Search on ENCODE]
GSM945316 H7 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM945184 H7 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM945315 H7 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM945324 H7 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM945192 H7 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM733768 None Myoblast Skeletal Muscle H3K4me2 [Search on ENCODE]
GSM1003562 None Monocyte Blood H3K36me3 [Search on ENCODE]
GSM733704 None Osteoblast Bone H3K4me1 [Search on ENCODE]
GSM1252296 None None Stomach H3K36me3 [Search on ENCODE]
GSM1399013 NTKO Multiple myeloma cell None H3K36me3 [Search on ENCODE]
GSM1399017 None Multiple myeloma None H3K36me3 [Search on ENCODE]
GSM1517574 A673 Polygonal Muscle H3K27ac [Search on ENCODE]
GSM1418961 IMR90 Fibroblast Lung H3K4me1 [Search on ENCODE]
GSM818034 H1 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM772748 None Mesenchymal Stem Cell Adipose H3K4me1 [Search on ENCODE]
GSM772751 HUES64 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM772814 None None Cord blood H3K36me3 [Search on ENCODE]
GSM772818 None Mesenchymal Stem Cell Adipose H3K36me3 [Search on ENCODE]
GSM772838 None Smooth Muscle Cell Duodenum H3K36me3 [Search on ENCODE]
GSM1422981 None Melanocytic cell None H3K27ac [Search on ENCODE]
GSM772846 None iPSC None H3K36me3 [Search on ENCODE]
GSM2067517 MCF-7 None Breast H3K4me1 [Search on ENCODE]
GSM2263020 None Monocyte Blood H3K4me1 [Search on ENCODE]
GSM2280007 None Cardiomyocyte None H3K36me3 [Search on ENCODE]
GSM2280000 None Cardiomyocyte None H3K36me3 [Search on ENCODE]
GSM2279967 None Cardiomyocyte None H3K36me3 [Search on ENCODE]
GSM772866 None T Lymphocyte Blood H3K36me3 [Search on ENCODE]
GSM772912 HUES64 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM772945 None T Lymphocyte Blood H3K36me3 [Search on ENCODE]
GSM2667961 HCT-116 None HCT116 H3K27ac [Search on ENCODE]
GSM2667960 HCT-116 None HCT116 H3K27ac [Search on ENCODE]
GSM772982 None Inferior Temporal Lobe Cell Brain H3K36me3 [Search on ENCODE]
GSM1064373 None Epithelium None H3K4me1 [Search on ENCODE]
GSM773027 None iPSC None H3K36me3 [Search on ENCODE]
GSM773042 None Haematopoietic Progenitor Cell Cord blood H3K36me3 [Search on ENCODE]
GSM2476343 SKmel147 melanoma None H3K4me1 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.