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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 113769317-113769318 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM665819 None None Fetal Brain DNase [Search on ENCODE]
GSM1059529 None None Cord blood DNase [Search on ENCODE]
GSM646563 H7 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM878615 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM1014510 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM736622 BE2-C Neuroblast Brain DNase [Search on ENCODE]
GSM1581822 None Myeloid Cell None DNase [Search on ENCODE]
GSM1581825 None Myeloid Cell None DNase [Search on ENCODE]
GSM2065330 None Neuron None ATAC-seq [Search on ENCODE]
ENCSR782XFY_2 None None Eye DNase [Search on ENCODE]
ENCSR963ALV None Neural Progenitor Cell None DNase [Search on ENCODE]
ENCSR621ENC_2 None None Retina DNase [Search on ENCODE]
ENCSR820ICX_1 None None Retina DNase [Search on ENCODE]
GSM2243040 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM2243039 None Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2243038 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM2243037 None Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2243034 Gen2.2 Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2679878 None Monocyte Blood ATAC-seq [Search on ENCODE]
GSM2679870 None Monocyte Blood ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.