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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 12356629-12356630 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM471810 Rh4 None Muscle PAX3 [Search on ENCODE]
GSM1095934 None Epithelium Cervix HIRA [Search on ENCODE]
GSM798393 None Epithelium Mammary Gland ESR1 [Search on ENCODE]
GSM817351 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM817353 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM817354 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM1328979 VCaP Epithelium Prostate ERG [Search on ENCODE]
GSM803541 ECC-1 Epithelium Endometrium ESR1 [Search on ENCODE]
GSM803422 ECC-1 Epithelium Endometrium ESR1 [Search on ENCODE]
GSM1010738 SK-N-SH Neuroblastoma cell Brain GATA3 [Search on ENCODE]
GSM1527926 90-8TL Schwann Cell Brain BRD4 [Search on ENCODE]
GSM1527929 90-8TL Schwann Cell Brain BRD4 [Search on ENCODE]
GSM1068136 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1068137 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1354837 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1600544 LNCaP Epithelium Prostate GATA2 [Search on ENCODE]
GSM558678 GIST48 Mesenchymal Stem Cell Stomach ETV1 [Search on ENCODE]
GSM941195 LNCaP Epithelium Prostate GATA2 [Search on ENCODE]
GSM1777605 VCaP Epithelium Prostate SUMO2 [Search on ENCODE]
GSM1777610 VCaP Epithelium Prostate SUMO2 [Search on ENCODE]
GSM1825746 None Fibroblast None T [Search on ENCODE]
ENCSR324LTM_1 HEK293 Epithelium Embryonic Kidney OSR2 [Search on ENCODE]
ENCSR328SUD_1 HEK293 Epithelium Embryonic Kidney ZNF335 [Search on ENCODE]
ENCSR328SUD_2 HEK293 Epithelium Embryonic Kidney ZNF335 [Search on ENCODE]
ENCSR559IOZ_2 HEK293 Epithelium Embryonic Kidney ZXDB [Search on ENCODE]
ENCSR827NWO_1 HEK293 Epithelium Embryonic Kidney FEZF1 [Search on ENCODE]
ENCSR966PJJ_1 HEK293 Epithelium Embryonic Kidney WT1 [Search on ENCODE]
GSM2026868 HEK293 Epithelium Embryonic Kidney ZSCAN16 [Search on ENCODE]
GSM2026879 HEK293 Epithelium Embryonic Kidney PRDM6 [Search on ENCODE]
GSM2026757 HEK293 Epithelium Embryonic Kidney ZBTB48 [Search on ENCODE]
GSM2026778 HEK293 Epithelium Embryonic Kidney MZF1 [Search on ENCODE]
GSM1904597 None Cortex Embryonic Kidney SIX2 [Search on ENCODE]
GSM1873044 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1873040 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1873039 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1586664 LNCaP Epithelium Prostate AR [Search on ENCODE]
GSM1586660 C4-2 None Prostate AR [Search on ENCODE]
GSM2058879 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM1858655 T47D Embryonic Stem Cell Breast FOXA1 [Search on ENCODE]
GSM1970531 None Cortex Kidney SIX2 [Search on ENCODE]
GSM1970530 None Cortex Kidney SIX2 [Search on ENCODE]
GSM2219874 LNCaP Epithelium Prostate PIAS1 [Search on ENCODE]
GSM2219861 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2219860 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2214116 Rh4 rhabdomyosarcoma None EP300 [Search on ENCODE]
GSM2519947 None None Muscle NR3C1 [Search on ENCODE]
GSM2797078 None None Breast FOXA1 [Search on ENCODE]
GSM2277153 LNCaP Epithelium Prostate HNF4G [Search on ENCODE]
GSM2537229 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2537225 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2537226 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2537227 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2278004 HCC70 Epithelium Breast STAT3 [Search on ENCODE]
GSM2278005 HCC70 Epithelium Breast STAT3 [Search on ENCODE]
GSM717397 VCaP Epithelium Prostate ERG [Search on ENCODE]
GSM2537230 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.