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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 155529506-155529507 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1233913 GM12878 B Lymphocyte Blood STAG1 [Search on ENCODE]
GSM1233934 GM12891 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1233953 GM12891 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233991 GM18486 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234143 GM19240 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234161 GM2255 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234178 GM2588 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234179 GM2588 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234196 GM2610 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1003602 GM12878 B Lymphocyte Blood ZNF384 [Search on ENCODE]
GSM935294 GM12878 B Lymphocyte Blood EP300 [Search on ENCODE]
GSM935562 GM12878 B Lymphocyte Blood EP300 [Search on ENCODE]
GSM803534 GM12878 B Lymphocyte Blood POU2F2 [Search on ENCODE]
GSM1010893 GM12878 B Lymphocyte Blood RUNX3 [Search on ENCODE]
GSM1290185 GM12878 B Lymphocyte Blood EP300 [Search on ENCODE]
GSM1333964 GM12878 B Lymphocyte Blood EP300 [Search on ENCODE]
GSM1668937 None B Lymphocyte Tonsil BCL6 [Search on ENCODE]
ENCSR189YYK_2 GM12878 B Lymphocyte Blood ZBTB40 [Search on ENCODE]
ENCSR293QAR_1 GM12878 B Lymphocyte Blood MTA2 [Search on ENCODE]
ENCSR293QAR_2 GM12878 B Lymphocyte Blood MTA2 [Search on ENCODE]
ENCSR412QBS_1 GM12878 B Lymphocyte Blood TARDBP [Search on ENCODE]
ENCSR412QBS_2 GM12878 B Lymphocyte Blood TARDBP [Search on ENCODE]
ENCSR739IHN_1 GM12878 B Lymphocyte Blood TBX21 [Search on ENCODE]
ENCSR835XKS_1 GM12878 B Lymphocyte Blood TRIM22 [Search on ENCODE]
ENCSR835XKS_2 GM12878 B Lymphocyte Blood TRIM22 [Search on ENCODE]
ENCSR874AFU_1 GM12878 B Lymphocyte Blood IKZF1 [Search on ENCODE]
ENCSR874AFU_2 GM12878 B Lymphocyte Blood IKZF1 [Search on ENCODE]
GSM2212239 SEM B Lymphocyte None MED1 [Search on ENCODE]
GSM2443458 LCL B Lymphocyte None MED1 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.