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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 8533804-8533805 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1505696 HUES64 Embryonic Stem Cell Embryo NANOG [Search on ENCODE]
ENCSR189YYK_2 GM12878 B Lymphocyte Blood ZBTB40 [Search on ENCODE]
ENCSR874AFU_2 GM12878 B Lymphocyte Blood IKZF1 [Search on ENCODE]
GSM1904597 None Cortex Embryonic Kidney SIX2 [Search on ENCODE]
GSM1970531 None Cortex Kidney SIX2 [Search on ENCODE]
GSM1970530 None Cortex Kidney SIX2 [Search on ENCODE]
GSM2421988 None None meningioma TRAF7 [Search on ENCODE]
GSM2746540 SW480 None Colon TP53 [Search on ENCODE]
GSM2817659 H9 Embryonic Stem Cell Embryo GATA3 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.