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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 184002002-184002003 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM768310 H9 Embryonic Stem Cell Embryo FOXP1 [Search on ENCODE]
GSM1162751 HCT-116 None Colon ICE1 [Search on ENCODE]
GSM1003500 None Epithelium Mammary Gland H2AZ [Search on ENCODE]
GSM733760 None Myoblast Skeletal Muscle H2AZ [Search on ENCODE]
GSM733746 None Myoblast Skeletal Muscle H2AZ [Search on ENCODE]
GSM1003488 NHEK Keratinocyte Skin H2AZ [Search on ENCODE]
GSM1010758 HCT-116 None Colon CBX3 [Search on ENCODE]
GSM1010904 HCT-116 None Colon MAX [Search on ENCODE]
GSM1125261 BT-549 Epithelium Mammary Gland FOSL1 [Search on ENCODE]
GSM1381222 None Neural Stem Cell None CHD8 [Search on ENCODE]
GSM1517753 501-Mel Melanoma Cell None SMARCA4 [Search on ENCODE]
GSM1614037 MDA-MB-231 Epithelium Breast JUN [Search on ENCODE]
GSM807391 H9 Embryonic Stem Cell Embryo H2AZ [Search on ENCODE]
GSM1856032 MDA-MB-231 Epithelium Mammary Gland SMARCA4 [Search on ENCODE]
GSM1856030 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM2330590 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2265636 SF8628 None Pontine BRD2 [Search on ENCODE]
GSM2360990 None 3565 cells None JMJD6 [Search on ENCODE]
GSM1423007 None Melanocytic cell None PMEL [Search on ENCODE]
GSM2359436 A375 melanoma Skin BRD4 [Search on ENCODE]
GSM2359435 A375 melanoma Skin BRD4 [Search on ENCODE]
GSM2746540 SW480 None Colon TP53 [Search on ENCODE]
GSM2359450 N87 None Stomach BRD4 [Search on ENCODE]
GSM2436683 A673 Polygonal Muscle MKL2 [Search on ENCODE]
GSM2909536 PrEC Epithelium Prostate ZFX [Search on ENCODE]
GSM2809636 HCT-116 None Colon H2AZ [Search on ENCODE]
GSM2359448 N87 None Stomach BRD4 [Search on ENCODE]
GSM2436685 A673 Polygonal Muscle MKL2 [Search on ENCODE]
GSM2809635 HCT-116 None Colon H2AZ [Search on ENCODE]
GSM2409700 None Embryonic Stem Cell epithelioid sarcoma SMARCB1 [Search on ENCODE]
GSM2719737 HCT-116 None HCT116 ARID1A [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.