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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 184002002-184002003 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1014508 HA-sp Astrocyte Spinal Cord DNase [Search on ENCODE]
GSM849029 None Fibroblast Umbilical Vein DNase [Search on ENCODE]
GSM1855976 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1662254 None Epithelium Corneal Epithelium ATAC-seq [Search on ENCODE]
ENCSR257BGZ_2 ACHN None Kidney DNase [Search on ENCODE]
ENCSR346JWH_2 A673 Polygonal Muscle DNase [Search on ENCODE]
ENCSR620WAR_2 SJSA-1 Fibroblast Bone DNase [Search on ENCODE]
ENCSR224IYD_1 None None Medulla Oblongata DNase [Search on ENCODE]
ENCSR503HIB_1 None Cortex Cerebellum DNase [Search on ENCODE]
ENCSR706IDL_1 None None Midbrain DNase [Search on ENCODE]
GSM2174880 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM1876021 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1946434 hFOB Embryonic Stem Cell Bone DNase [Search on ENCODE]
GSM2719729 HCT-116 None Colon ATAC-seq [Search on ENCODE]
GSM2719724 HCT-116 None Colon ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.