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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 13712929-13713082 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1198993 ReN-VM Neural Stem Cell None SOX2 [Search on ENCODE]
GSM651558 None CD36 Cell None SMARCA4 [Search on ENCODE]
GSM763404 OCI-Ly1 B cell lymphoma Bone Marrow BCL6 [Search on ENCODE]
GSM763428 OCI-Ly1 B cell lymphoma Bone Marrow POLR2A [Search on ENCODE]
GSM822299 GM12892 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM822294 GM12891 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1233888 GM12878 B Lymphocyte Blood CTCF [Search on ENCODE]
GSM1234120 GM19239 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234143 GM19240 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234178 GM2588 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234196 GM2610 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM935461 Raji B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM803534 GM12878 B Lymphocyte Blood POU2F2 [Search on ENCODE]
GSM803496 GM12878 B Lymphocyte Blood ELF1 [Search on ENCODE]
GSM1010893 GM12878 B Lymphocyte Blood RUNX3 [Search on ENCODE]
GSM803397 GM12891 Lymphoblastoid Blood POU2F2 [Search on ENCODE]
GSM803489 GM12892 Lymphoblastoid Blood TAF1 [Search on ENCODE]
GSM489293 GM12891 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM489294 GM12891 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM489295 GM12892 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1544525 None Epithelium None SPI1 [Search on ENCODE]
GSM790207 EWS502 Small Round Tumor Cell None FLI1 [Search on ENCODE]
GSM762710 BL-41 B Lymphocyte Blood MYC [Search on ENCODE]
ENCSR199WXF_2 GM12878 B Lymphocyte Blood EED [Search on ENCODE]
ENCSR552XSN_2 GM12878 B Lymphocyte Blood MLLT1 [Search on ENCODE]
ENCSR874AFU_2 GM12878 B Lymphocyte Blood IKZF1 [Search on ENCODE]
GSM2095818 HBL1 B cell lymphoma None POU2F2 [Search on ENCODE]
GSM1970163 None Fibroblast Fetal Lung SOX4 [Search on ENCODE]
GSM2398967 None Macrophage None SP140 [Search on ENCODE]
GSM2687534 None Monocyte Blood RUNX1 [Search on ENCODE]
GSM2474865 HCT-116 None HCT116 MCM2 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.