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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 121743313-121743314 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1442789 IMR90 Fibroblast Lung EP300 [Search on ENCODE]
GSM1527025 LNCaP Epithelium Prostate AR [Search on ENCODE]
GSM1527026 LNCaP Epithelium Prostate AR [Search on ENCODE]
GSM1684571 PANC-1 None Pancreas CTCF [Search on ENCODE]
GSM1684572 PANC-1 None Pancreas CTCF [Search on ENCODE]
GSM1684573 PANC-1 None Pancreas CTCF [Search on ENCODE]
GSM1684574 PANC-1 None Pancreas CTCF [Search on ENCODE]
ENCSR504VDV_1 HEK293 Epithelium Embryonic Kidney ZNF654 [Search on ENCODE]
GSM2599085 MCF-10A Epithelium None CTCF [Search on ENCODE]
GSM2572338 SHEP-21N Neuroblastoma cell Bone Marrow CTCF [Search on ENCODE]
GSM2871000 NB69 None None CTCF [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.