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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 26123511-26123512 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM730704 None Endothelial Cell Umbilical Vein FOS [Search on ENCODE]
GSM730702 None Endothelial Cell Umbilical Vein GATA2 [Search on ENCODE]
GSM730701 None Endothelial Cell Umbilical Vein GATA2 [Search on ENCODE]
GSM610337 K562 Erythroblast Bone Marrow FOS [Search on ENCODE]
GSM610336 K562 Erythroblast Bone Marrow FOS [Search on ENCODE]
GSM487426 K562 Erythroblast Bone Marrow FOS [Search on ENCODE]
GSM487425 K562 Erythroblast Bone Marrow JUN [Search on ENCODE]
GSM720423 MCF-7 Epithelium Breast GATA3 [Search on ENCODE]
GSM720422 MCF-7 Epithelium Breast GATA3 [Search on ENCODE]
GSM651547 None Proerythroblast Bone Marrow GATA1 [Search on ENCODE]
GSM651546 None Proerythroblast Bone Marrow GATA1 [Search on ENCODE]
GSM1024799 MCF-7 Epithelium Breast AHR [Search on ENCODE]
GSM894077 U87 None Brain MAX [Search on ENCODE]
GSM970258 None Proerythroblast Bone Marrow GATA1 [Search on ENCODE]
GSM776558 None Th1 None GATA3 [Search on ENCODE]
GSM776559 None Th2 None GATA3 [Search on ENCODE]
GSM983102 NCI-H2087 None Lung NKX2-1 [Search on ENCODE]
GSM1122847 None Epithelium Mammary Gland FAIRE [Search on ENCODE]
GSM1208763 LoVo None Colon JUND [Search on ENCODE]
GSM1067275 None Erythroid Cell None KLF1 [Search on ENCODE]
GSM1067276 None Erythroid Cell None NFE2 [Search on ENCODE]
GSM934616 LX2 Hepatic Stellate Cell None SMAD3 [Search on ENCODE]
GSM934615 LX2 Hepatic Stellate Cell None SMAD3 [Search on ENCODE]
GSM1162751 HCT-116 None Colon ICE1 [Search on ENCODE]
GSM1195554 U87 None Brain POLR2A [Search on ENCODE]
GSM1195552 U87 None Brain BRD4 [Search on ENCODE]
GSM1195551 U87 None Brain BRD4 [Search on ENCODE]
GSM1240109 HCT-116 None Colon KMT2B [Search on ENCODE]
GSM1278240 None Proerythroblast Bone Marrow GATA1 [Search on ENCODE]
GSM1278241 None Proerythroblast Bone Marrow TAL1 [Search on ENCODE]
GSM1327160 293FT None Embryonic Kidney EMX1 [Search on ENCODE]
GSM1003500 None Epithelium Mammary Gland H2AZ [Search on ENCODE]
GSM1003488 NHEK Keratinocyte Skin H2AZ [Search on ENCODE]
GSM935500 HeLa-S3 Epithelium Cervix EP300 [Search on ENCODE]
GSM935328 HeLa-S3 Epithelium Cervix JUND [Search on ENCODE]
GSM935341 HeLa-S3 Epithelium Cervix JUN [Search on ENCODE]
GSM935553 HeLa-S3 Epithelium Cervix CEBPB [Search on ENCODE]
GSM935278 None Endothelial Cell Umbilical Vein JUN [Search on ENCODE]
GSM935347 None Endothelial Cell Umbilical Vein GATA2 [Search on ENCODE]
GSM935585 None Endothelial Cell Umbilical Vein FOS [Search on ENCODE]
GSM935411 K562 Erythroblast Bone Marrow JUN [Search on ENCODE]
GSM935569 K562 Erythroblast Bone Marrow JUND [Search on ENCODE]
GSM1003609 K562 Erythroblast Bone Marrow JUN [Search on ENCODE]
GSM935504 K562 Erythroblast Bone Marrow IRF1 [Search on ENCODE]
GSM935467 K562 Erythroblast Bone Marrow JUN [Search on ENCODE]
GSM935355 K562 Erythroblast Bone Marrow FOS [Search on ENCODE]
GSM935505 K562 Erythroblast Bone Marrow IRF1 [Search on ENCODE]
GSM935398 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM935491 MCF-10A Epithelium Breast MYC [Search on ENCODE]
GSM935396 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM935397 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM935438 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM1003632 SK-N-SH Neuroblastoma cell Brain JUND [Search on ENCODE]
GSM1010727 A549 Epithelium Lung GATA3 [Search on ENCODE]
GSM1010748 A549 Epithelium Lung FOSL2 [Search on ENCODE]
GSM1010836 HCT-116 None Colon USF1 [Search on ENCODE]
GSM1010852 HCT-116 None Colon CEBPB [Search on ENCODE]
GSM1010758 HCT-116 None Colon CBX3 [Search on ENCODE]
GSM1010851 HCT-116 None Colon SRF [Search on ENCODE]
GSM1010756 HCT-116 None Colon FOSL1 [Search on ENCODE]
GSM1010847 HCT-116 None Colon JUND [Search on ENCODE]
GSM1010902 HCT-116 None Colon SP1 [Search on ENCODE]
GSM1010904 HCT-116 None Colon MAX [Search on ENCODE]
GSM803380 K562 Erythroblast Bone Marrow ATF3 [Search on ENCODE]
GSM803439 K562 Erythroblast Bone Marrow FOSL1 [Search on ENCODE]
GSM803520 K562 Erythroblast Bone Marrow SRF [Search on ENCODE]
GSM1010783 MCF-7 Epithelium Breast GATA3 [Search on ENCODE]
GSM1010768 MCF-7 Epithelium Breast FOSL2 [Search on ENCODE]
GSM1010897 SK-N-SH Neuroblastoma cell Brain YY1 [Search on ENCODE]
GSM1010880 SK-N-SH Neuroblastoma cell Brain NFIC [Search on ENCODE]
GSM1010840 SK-N-SH Neuroblastoma cell Brain FOSL2 [Search on ENCODE]
GSM1010901 SK-N-SH Neuroblastoma cell Brain JUND [Search on ENCODE]
GSM1010887 SK-N-SH Neuroblastoma cell Brain PBX3 [Search on ENCODE]
GSM1010738 SK-N-SH Neuroblastoma cell Brain GATA3 [Search on ENCODE]
GSM1010900 SK-N-SH Neuroblastoma cell Brain TCF12 [Search on ENCODE]
GSM1125261 BT-549 Epithelium Mammary Gland FOSL1 [Search on ENCODE]
GSM1246714 NCI-H441 Epithelium Lung SMAD3 [Search on ENCODE]
GSM1246715 NCI-H441 Epithelium Lung TTF1 [Search on ENCODE]
GSM1246716 NCI-H441 Epithelium Lung TTF1 [Search on ENCODE]
GSM1336154 None Keratinocyte None SNAI2 [Search on ENCODE]
GSM1336158 None Keratinocyte None SNAI2 [Search on ENCODE]
GSM1387028 None Keratinocyte Foreskin KLF4 [Search on ENCODE]
GSM1446926 None Keratinocyte None POLR2A [Search on ENCODE]
GSM1446927 None Keratinocyte None TP63 [Search on ENCODE]
GSM1446929 None Keratinocyte None TP63 [Search on ENCODE]
GSM1503219 None None Coronary artery smooth muscle JUN [Search on ENCODE]
GSM1503220 None None Coronary artery smooth muscle JUND [Search on ENCODE]
GSM1678029 PC-3 Epithelium Prostate DAXX [Search on ENCODE]
GSM1684636 None Mesenchymal Stem Cell None CEBPB [Search on ENCODE]
GSM1614036 MDA-MB-231 Epithelium Breast JUN [Search on ENCODE]
GSM1614037 MDA-MB-231 Epithelium Breast JUN [Search on ENCODE]
GSM1782703 K562 Erythroblast Bone Marrow GATA1 [Search on ENCODE]
GSM804013 None Erythroblast Blood GATA1 [Search on ENCODE]
GSM1517093 HeLa Epithelium Cervix EP300 [Search on ENCODE]
GSM1700784 MDA-MB-231 Epithelium Breast JUN [Search on ENCODE]
GSM1716770 LHSAR Epithelium Prostate AR [Search on ENCODE]
GSM1888546 TF-1 Erythroblast Bone Marrow GATA2 [Search on ENCODE]
GSM1888547 TF-1 Erythroblast Bone Marrow GATA2 [Search on ENCODE]
ENCSR103UVU_2 A549 Epithelium Lung FOSL2 [Search on ENCODE]
ENCSR111ZXV_3 A549 Epithelium Lung FOSL2 [Search on ENCODE]
ENCSR223TAV_1 HEK293 Epithelium Embryonic Kidney PRDM10 [Search on ENCODE]
ENCSR239ZLZ_1 K562 Erythroblast Bone Marrow FOSL1 [Search on ENCODE]
ENCSR239ZLZ_2 K562 Erythroblast Bone Marrow FOSL1 [Search on ENCODE]
ENCSR338DGO_1 HEK293 Epithelium Embryonic Kidney SCRT2 [Search on ENCODE]
ENCSR338DGO_2 HEK293 Epithelium Embryonic Kidney SCRT2 [Search on ENCODE]
ENCSR350XWY_1 K562 Erythroblast Bone Marrow C11orf30 [Search on ENCODE]
ENCSR423RTK_1 MCF-7 Epithelium Breast GATA3 [Search on ENCODE]
ENCSR423RTK_2 MCF-7 Epithelium Breast GATA3 [Search on ENCODE]
ENCSR535HFQ_2 A549 Epithelium Lung FOSL2 [Search on ENCODE]
ENCSR546KCN_1 MCF-7 Epithelium Breast FOSL2 [Search on ENCODE]
ENCSR563GCV_3 A549 Epithelium Lung FOSL2 [Search on ENCODE]
ENCSR593DGU_1 A549 Epithelium Lung FOSL2 [Search on ENCODE]
ENCSR757IIU_1 K562 Erythroblast Bone Marrow HMBOX1 [Search on ENCODE]
ENCSR900RUE_2 A549 Epithelium Lung FOSL2 [Search on ENCODE]
GSM2026739 HEK293 Epithelium Embryonic Kidney FEZF1 [Search on ENCODE]
GSM1856013 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1855968 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1919982 CFPAC-1 original PDAC cell line Pancreatic ductal KLF4 [Search on ENCODE]
GSM2042852 HT29 colorectal adenocarcinoma None NR1H3 [Search on ENCODE]
GSM2042850 HT29 colorectal adenocarcinoma None NR1H3 [Search on ENCODE]
GSM2305254 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2104436 HeLa Epithelium Cervix MBD3 [Search on ENCODE]
GSM777644 K562 Erythroblast Bone Marrow FOS [Search on ENCODE]
GSM777638 K562 Erythroblast Bone Marrow JUNB [Search on ENCODE]
GSM2501568 MDA-MB-231 None Breast TP53 [Search on ENCODE]
GSM2635314 MG-63 Osteosarcoma cell None FOSL1 [Search on ENCODE]
GSM2409676 TTC1240 None Malignant rhabdoid tumor SMARCB1 [Search on ENCODE]
GSM2977504 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2571043 HCT-116 None HCT116 POLR2A [Search on ENCODE]
GSM2571047 HCT-116 None HCT116 POLR2A [Search on ENCODE]
GSM2571063 HCT-116 None HCT116 POLR2A [Search on ENCODE]
GSM2394414 JHU-06 Endothelial Cell None JUN [Search on ENCODE]
GSM2809638 HCT-116 None Colon NIPBL [Search on ENCODE]
GSM2409665 G-401 None Malignant rhabdoid tumor SMARCC1 [Search on ENCODE]
GSM2430676 BJ Fibroblast Skin GATA4 [Search on ENCODE]
GSM2360622 MDA-231 Epithelium Mammary Gland ZEB1 [Search on ENCODE]
GSM2977503 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2571051 HCT-116 None HCT116 POLR2A [Search on ENCODE]
GSM2571055 HCT-116 None HCT116 POLR2A [Search on ENCODE]
GSM2409708 TTC1240 None Malignant rhabdoid tumor SS18 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.