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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 110214635-110214636 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM503904 LNCaP Epithelium Prostate H3K4me2 [Search on ENCODE]
GSM969568 LNCaP-abl Epithelium Prostate H3K4me2 [Search on ENCODE]
GSM1402792 MCF-7 Epithelium Breast H3R26Cit [Search on ENCODE]
GSM1606427 None None Pancreas H3K27ac [Search on ENCODE]
GSM1606434 None None Pancreas H3K27ac [Search on ENCODE]
GSM1862998 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1862999 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM2171842 MCF-7 asynchonous cells Breast H3K4me1 [Search on ENCODE]
GSM2171841 MCF-7 asynchonous cells Breast H3K4me1 [Search on ENCODE]
GSM2171837 MCF-7 asynchonous cells Breast H3K4me1 [Search on ENCODE]
GSM2277155 LNCaP Epithelium Prostate H3K4me1 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.