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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 110214635-110214636 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM530653 None None Fetal Adrenal Gland DNase [Search on ENCODE]
GSM646565 None Epithelium None DNase [Search on ENCODE]
GSM646560 None Epithelium Amnion DNase [Search on ENCODE]
GSM1027326 None None Pancreas DNase [Search on ENCODE]
GSM1027325 None None Stomach DNase [Search on ENCODE]
GSM1027332 None Epithelium Fetal Placenta DNase [Search on ENCODE]
GSM1014510 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM1014520 None Epithelium None DNase [Search on ENCODE]
GSM849027 None Cortex Kidney DNase [Search on ENCODE]
GSM1255262 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1255263 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1255265 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1255266 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1255268 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1255269 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1255272 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1255277 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1255278 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM736596 BJ Fibroblast Skin DNase [Search on ENCODE]
GSM736606 None Epithelium Amnion DNase [Search on ENCODE]
GSM736631 None Epithelium Amnion DNase [Search on ENCODE]
GSM736510 HeLa-S3 Epithelium Cervix DNase [Search on ENCODE]
GSM736564 HeLa-S3 Epithelium Cervix DNase [Search on ENCODE]
GSM736549 None Cortex Kidney DNase [Search on ENCODE]
GSM736630 None Epithelium None DNase [Search on ENCODE]
GSM736491 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM736534 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM736565 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM736603 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM736581 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM736588 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024764 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024767 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024784 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024783 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM763533 HeLa Epithelium Cervix DNase [Search on ENCODE]
GSM1443801 hMADS-3 Adipocyte Adipose DNase [Search on ENCODE]
ENCSR814KRX_1 HT29 None Colon DNase [Search on ENCODE]
ENCSR940NLN_1 PC-9 Lung Cancer Cell Lung DNase [Search on ENCODE]
ENCSR940NLN_2 PC-9 Lung Cancer Cell Lung DNase [Search on ENCODE]
ENCSR217TAW_2 None Fibroblast None DNase [Search on ENCODE]
ENCSR848XIY_1 None None Adrenal Gland DNase [Search on ENCODE]
GSM816634 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1858670 ZR-75-1 Embryonic Stem Cell Breast DNase [Search on ENCODE]
GSM1858672 ZR-75-1 Embryonic Stem Cell Breast DNase [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.