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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 28928466-28928467 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM776559 None Th2 None GATA3 [Search on ENCODE]
GSM1032075 SEM Pre-B Lymphocyte None RUNX1 [Search on ENCODE]
GSM763410 OCI-Ly1 B cell lymphoma Bone Marrow BCOR [Search on ENCODE]
GSM980658 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM1082309 Kasumi-1 Myeloblast Blood TCF7L1 [Search on ENCODE]
GSM1252931 CUTLL1 T Lymphocyte Blood RUNX1 [Search on ENCODE]
GSM817347 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM817349 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM1327160 293FT None Embryonic Kidney EMX1 [Search on ENCODE]
GSM1328978 VCaP Epithelium Prostate ERG [Search on ENCODE]
GSM1328979 VCaP Epithelium Prostate ERG [Search on ENCODE]
GSM1328980 VCaP Epithelium Prostate ERG [Search on ENCODE]
GSM1003476 None B Lymphocyte Blood H2AZ [Search on ENCODE]
GSM935430 GM12878 B Lymphocyte Blood BHLHE40 [Search on ENCODE]
GSM935589 SH-SY5Y None Bone Marrow GATA2 [Search on ENCODE]
GSM1003626 SK-N-SH Neuroblastoma cell Brain EP300 [Search on ENCODE]
GSM1003628 SK-N-SH_RA Neuron Brain RAD21 [Search on ENCODE]
GSM1308229 HEK293 Epithelium Embryonic Kidney AR [Search on ENCODE]
GSM1308230 HEK293 Epithelium Embryonic Kidney AR [Search on ENCODE]
GSM1308233 HEK293 Epithelium Embryonic Kidney AR [Search on ENCODE]
GSM1410768 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM1442005 Jurkat T Lymphocyte Blood MYB [Search on ENCODE]
GSM1442006 Jurkat T Lymphocyte Blood MYB [Search on ENCODE]
GSM1519641 Jurkat T Lymphocyte Blood MYB [Search on ENCODE]
GSM1519646 MOLT-3 T Lymphoblast Peripheral Blood TAL1 [Search on ENCODE]
GSM1354830 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM1354836 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1354837 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1354838 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1354839 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1463461 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1463462 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1463463 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1463464 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1543791 LNCaP Epithelium Prostate TOP1 [Search on ENCODE]
GSM1603217 Jurkat T Lymphocyte Blood POLR2A [Search on ENCODE]
GSM838400 C4-2B Epithelium Prostate RUNX2 [Search on ENCODE]
GSM1647185 HEK293A None None MEF2B [Search on ENCODE]
GSM1647188 HEK293A None None MEF2B [Search on ENCODE]
GSM1697879 Jurkat T Lymphocyte Blood RUNX1 [Search on ENCODE]
GSM1697881 Jurkat T Lymphocyte Blood GATA3 [Search on ENCODE]
GSM1777610 VCaP Epithelium Prostate SUMO2 [Search on ENCODE]
GSM1782702 K562 Erythroblast Bone Marrow GATA1 [Search on ENCODE]
GSM1680102 BE2-C Neuroblast Brain GATA3 [Search on ENCODE]
GSM1817197 None Neural crest cell Cranial TFAP2A [Search on ENCODE]
GSM1817199 None Neural crest cell Cranial TFAP2A [Search on ENCODE]
GSM1817200 None Neural crest cell Cranial TFAP2A [Search on ENCODE]
GSM1975912 Jurkat T Lymphocyte Blood RUNX1 [Search on ENCODE]
GSM1975913 Jurkat T Lymphocyte Blood GATA3 [Search on ENCODE]
ENCSR106EBH_2 HEK293 Epithelium Embryonic Kidney ZNF366 [Search on ENCODE]
ENCSR159GFL_1 HEK293 Epithelium Embryonic Kidney ZNF518A [Search on ENCODE]
ENCSR223TAV_1 HEK293 Epithelium Embryonic Kidney PRDM10 [Search on ENCODE]
ENCSR223TAV_2 HEK293 Epithelium Embryonic Kidney PRDM10 [Search on ENCODE]
ENCSR324LTM_1 HEK293 Epithelium Embryonic Kidney OSR2 [Search on ENCODE]
ENCSR468IJT_1 HEK293 Epithelium Embryonic Kidney SP7 [Search on ENCODE]
ENCSR468IJT_2 HEK293 Epithelium Embryonic Kidney SP7 [Search on ENCODE]
ENCSR482BBZ_1 HEK293 Epithelium Embryonic Kidney GLIS1 [Search on ENCODE]
ENCSR739IHN_1 GM12878 B Lymphocyte Blood TBX21 [Search on ENCODE]
ENCSR767HOP_1 HEK293 Epithelium Embryonic Kidney ZSCAN20 [Search on ENCODE]
ENCSR767HOP_2 HEK293 Epithelium Embryonic Kidney ZSCAN20 [Search on ENCODE]
ENCSR827NWO_1 HEK293 Epithelium Embryonic Kidney FEZF1 [Search on ENCODE]
ENCSR874AFU_2 GM12878 B Lymphocyte Blood IKZF1 [Search on ENCODE]
GSM2026829 HEK293 Epithelium Embryonic Kidney OSR2 [Search on ENCODE]
GSM2026860 HEK293 Epithelium Embryonic Kidney ZNF382 [Search on ENCODE]
GSM2026757 HEK293 Epithelium Embryonic Kidney ZBTB48 [Search on ENCODE]
GSM2026832 HEK293 Epithelium Embryonic Kidney GLIS1 [Search on ENCODE]
GSM1904597 None Cortex Embryonic Kidney SIX2 [Search on ENCODE]
GSM1856012 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1873044 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2058880 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM2058879 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM1970531 None Cortex Kidney SIX2 [Search on ENCODE]
GSM1970530 None Cortex Kidney SIX2 [Search on ENCODE]
GSM1970528 None Cortex Kidney SIX2 [Search on ENCODE]
GSM2219864 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2219863 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1527697 None Th2 None POLR2A [Search on ENCODE]
GSM2474553 Jurkat T Lymphocyte Blood LMO1 [Search on ENCODE]
GSM2432980 D283 Med None None OTX2 [Search on ENCODE]
GSM2579075 HEK293 Epithelium Embryonic Kidney POLR2A [Search on ENCODE]
GSM2579071 HEK293 Epithelium Embryonic Kidney POLR2A [Search on ENCODE]
GSM2410317 SK-N-SH Neuroblastoma cell Brain EBF3 [Search on ENCODE]
GSM2090926 MOLT-4 T Lymphoblast None CDK9 [Search on ENCODE]
GSM2090923 MOLT-4 T Lymphoblast None CDK9 [Search on ENCODE]
GSM2537226 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2537227 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2350452 C4-2 None Prostate BRD4 [Search on ENCODE]
GSM717393 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM717395 VCaP Epithelium Prostate ERG [Search on ENCODE]
GSM717396 VCaP Epithelium Prostate ERG [Search on ENCODE]
GSM717397 VCaP Epithelium Prostate ERG [Search on ENCODE]
GSM2977490 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2050700 None Endoderm Cell Endoderm GATA6 [Search on ENCODE]
GSM2537233 VCaP Epithelium Prostate HOXB13 [Search on ENCODE]
GSM957611 RPMI-8402 T cell leukemia Blood TCF12 [Search on ENCODE]
GSM957614 RPMI-8402 T cell leukemia Blood TAL1 [Search on ENCODE]
GSM920943 Raji B Lymphocyte Blood POLR2A [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.