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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 8630024-8630025 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM729854 IB4 Lymphocyte Blood RBPJ [Search on ENCODE]
GSM729852 IB4 Lymphocyte Blood SND1 [Search on ENCODE]
GSM894075 P493-6 B cell lymphoma None MAX [Search on ENCODE]
GSM894076 P493-6 B cell lymphoma None MAX [Search on ENCODE]
GSM894074 P493-6 B cell lymphoma None MAX [Search on ENCODE]
GSM945570 Raji B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM785501 None Macrophage None SPI1 [Search on ENCODE]
GSM785495 None Monocyte None SPI1 [Search on ENCODE]
GSM1122315 ME-1 Leukemia Cell None SPI1 [Search on ENCODE]
GSM1153765 Mutu III B Lymphocyte None SND1 [Search on ENCODE]
GSM1153766 Mutu III B Lymphocyte None EBNA3 [Search on ENCODE]
GSM1195560 None B Lymphocyte Blood IRF4 [Search on ENCODE]
GSM1057011 None Monocyte Blood STAT1 [Search on ENCODE]
GSM1057025 None Monocyte Blood IRF1 [Search on ENCODE]
GSM1057026 None Monocyte Blood IRF1 [Search on ENCODE]
GSM1057027 None Monocyte Blood IRF1 [Search on ENCODE]
GSM1233913 GM12878 B Lymphocyte Blood STAG1 [Search on ENCODE]
GSM1233931 GM12890 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233932 GM12890 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233953 GM12891 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233954 GM12891 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233976 GM12892 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233991 GM18486 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234060 GM19099 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234097 GM19238 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234120 GM19239 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234142 GM19240 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234161 GM2255 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234178 GM2588 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234179 GM2588 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234181 GM2610 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234196 GM2610 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234197 GM2610 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234200 GM2630 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234215 GM2630 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234237 MS1 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM638311 None Haematopoietic Progenitor Cell Cord blood SPI1 [Search on ENCODE]
GSM638310 None Haematopoietic Progenitor Cell Cord blood SPI1 [Search on ENCODE]
GSM935375 GM12878 B Lymphocyte Blood EBF1 [Search on ENCODE]
GSM935287 GM12891 Lymphoblastoid Blood POLR2A [Search on ENCODE]
GSM935461 Raji B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1010780 GM12878 B Lymphocyte Blood ATF2 [Search on ENCODE]
GSM803531 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM803386 GM12878 B Lymphocyte Blood EBF1 [Search on ENCODE]
GSM1010893 GM12878 B Lymphocyte Blood RUNX3 [Search on ENCODE]
GSM1010731 GM12878 B Lymphocyte Blood FOXM1 [Search on ENCODE]
GSM1010729 GM12878 B Lymphocyte Blood MTA3 [Search on ENCODE]
GSM803398 GM12891 Lymphoblastoid Blood SPI1 [Search on ENCODE]
GSM1010843 HL-60 Promyeloblast Blood SPI1 [Search on ENCODE]
GSM1277993 Raji B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1334006 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM1334007 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM1370276 OCI-Ly3 B Lymphocyte Bone Marrow SPIB [Search on ENCODE]
GSM1370281 OCI-Ly10 B Lymphocyte Bone Marrow SPIB [Search on ENCODE]
GSM1370289 OCI-Ly3 B Lymphocyte Bone Marrow SPIB [Search on ENCODE]
GSM1501166 Kasumi-1 Myeloblast Blood SPI1 [Search on ENCODE]
GSM1501167 Kasumi-1 Myeloblast Blood RUNX1 [Search on ENCODE]
GSM1421017 None Monocyte None SPI1 [Search on ENCODE]
GSM1421019 None Monocyte None SPI1 [Search on ENCODE]
GSM1288792 None Hematopoietic Stem Cell None TRIM28 [Search on ENCODE]
GSM1557623 TSU-1621-MT None None SPI1 [Search on ENCODE]
GSM1703900 None B Lymphocyte None SPI1 [Search on ENCODE]
GSM1893926 MOLM-14 Myeloid Cell None CDK8 [Search on ENCODE]
GSM624143 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
ENCSR293QAR_1 GM12878 B Lymphocyte Blood MTA2 [Search on ENCODE]
ENCSR552XSN_2 GM12878 B Lymphocyte Blood MLLT1 [Search on ENCODE]
ENCSR739IHN_1 GM12878 B Lymphocyte Blood TBX21 [Search on ENCODE]
ENCSR739IHN_2 GM12878 B Lymphocyte Blood TBX21 [Search on ENCODE]
ENCSR874AFU_2 GM12878 B Lymphocyte Blood IKZF1 [Search on ENCODE]
GSM1701828 None Neuronal Progenitor cell None SOX2 [Search on ENCODE]
GSM1816090 None Hematopoietic stem and progenitor cell Bone Marrow SPI1 [Search on ENCODE]
GSM1816089 None Hematopoietic stem and progenitor cell Fetal Liver SPI1 [Search on ENCODE]
GSM2039170 GM12878 B Lymphocyte Blood EBNA2 [Search on ENCODE]
GSM1681426 None Macrophage Blood SPI1 [Search on ENCODE]
GSM1681425 None Macrophage Blood SPI1 [Search on ENCODE]
GSM1681424 None Macrophage Blood SPI1 [Search on ENCODE]
GSM1681423 None Macrophage Blood SPI1 [Search on ENCODE]
GSM1844446 Kasumi-1 Myeloblast Blood KDM1A [Search on ENCODE]
GSM1845140 MV4;11 Leukemia Cell Blood BRD4 [Search on ENCODE]
GSM1976307 Raji B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1976301 Raji B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM1976300 Raji B Lymphocyte Blood MYC [Search on ENCODE]
GSM1975020 Gen2.2 Plasmacytoid dendritic cell None TCF4 [Search on ENCODE]
GSM1975018 CAL-1 Plasmacytoid dendritic cell None TCF4 [Search on ENCODE]
GSM2364555 None Monocyte Bone Marrow KMT2A [Search on ENCODE]
GSM2364553 None Monocyte Cord blood KMT2A [Search on ENCODE]
GSM2405928 MV4;11 Acute myeloid leukemia None CDK9 [Search on ENCODE]
GSM2544246 THP-1 Macrophage None CTCF [Search on ENCODE]
GSM2359987 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2359986 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2359985 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2359984 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2359983 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2359982 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2592808 None Macrophage Blood SPI1 [Search on ENCODE]
GSM2443455 LCL B Lymphocyte None SMC1A [Search on ENCODE]
GSM2443458 LCL B Lymphocyte None MED1 [Search on ENCODE]
GSM2592807 None Macrophage Blood SPI1 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.