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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 2578914-2578915 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1233888 GM12878 B Lymphocyte Blood CTCF [Search on ENCODE]
GSM1233914 GM12890 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1233915 GM12890 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1233934 GM12891 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1233956 GM12892 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1233993 GM18505 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234027 GM18951 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234045 GM19099 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234078 GM19238 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234079 GM19238 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234121 GM19240 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234122 GM19240 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234163 GM2588 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234181 GM2610 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234182 GM2610 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234197 GM2610 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234198 GM2630 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234199 GM2630 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234216 MS1 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1234218 MS1 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1003474 None B Lymphocyte Blood CTCF [Search on ENCODE]
GSM1003508 None Monocyte Blood CTCF [Search on ENCODE]
GSM538930 None Keratinocyte Skin TP63 [Search on ENCODE]
ENCSR028YEV_1 None None Spleen CTCF [Search on ENCODE]
ENCSR102CSD_1 None None Colon CTCF [Search on ENCODE]
ENCSR146BGM_1 None None gastroesophageal sphincter CTCF [Search on ENCODE]
ENCSR552XSN_1 GM12878 B Lymphocyte Blood MLLT1 [Search on ENCODE]
ENCSR661NXJ_1 None None Breast CTCF [Search on ENCODE]
ENCSR692ILH_1 None None Spleen CTCF [Search on ENCODE]
ENCSR833FWC_1 None None Colon CTCF [Search on ENCODE]
GSM2040765 GM12878 Lymphoblastoid None CTCF [Search on ENCODE]
GSM2040767 GM17942 Lymphoblastoid None CTCF [Search on ENCODE]
GSM889412 LS174T Epithelium Colon POLR2A [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.