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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 2578914-2578915 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1014537 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM1014521 None Th2 None DNase [Search on ENCODE]
GSM1024782 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM1024753 None Th1 Blood DNase [Search on ENCODE]
GSM1024792 None Th2 Blood DNase [Search on ENCODE]
GSM2048321 None Th17 Tonsil ATAC-seq [Search on ENCODE]
ENCSR782XFY_2 None None Eye DNase [Search on ENCODE]
ENCSR814KRX_2 HT29 None Colon DNase [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.