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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 113805148-113805149 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM530665 IMR90 Fibroblast Lung DNase [Search on ENCODE]
GSM701531 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM665840 None Monocyte Blood DNase [Search on ENCODE]
GSM665826 None Epithelium Large Intestine DNase [Search on ENCODE]
GSM665818 None Epithelium Large Intestine DNase [Search on ENCODE]
GSM530662 None Epithelium Lung DNase [Search on ENCODE]
GSM1036260 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM817219 None Epithelium Fetal Placenta DNase [Search on ENCODE]
GSM1059535 None Epithelium Fetal Placenta DNase [Search on ENCODE]
GSM646565 None Epithelium None DNase [Search on ENCODE]
GSM646560 None Epithelium Amnion DNase [Search on ENCODE]
GSM646561 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM646559 HepG2 Epithelium Liver DNase [Search on ENCODE]
GSM909313 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM909314 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM909312 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM1102736 None Monocyte Blood DNase [Search on ENCODE]
GSM878659 None Epithelium Fetal Placenta DNase [Search on ENCODE]
GSM1027332 None Epithelium Fetal Placenta DNase [Search on ENCODE]
GSM1027344 None Epithelium Fetal Lung Right DNase [Search on ENCODE]
GSM1027345 None Epithelium Fetal Lung Left DNase [Search on ENCODE]
GSM1027348 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM817197 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM817164 None Epithelium Fetal Lung Right DNase [Search on ENCODE]
GSM817162 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM817198 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM1014510 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM1014518 None Embryonic Fibroblast Heart DNase [Search on ENCODE]
GSM1014535 RPMI-7951 Melanoma Cell Skin DNase [Search on ENCODE]
GSM1014508 HA-sp Astrocyte Spinal Cord DNase [Search on ENCODE]
GSM1014511 None Epithelium Esophagus DNase [Search on ENCODE]
GSM1014515 None Myocyte Heart DNase [Search on ENCODE]
GSM1014517 A549 Epithelium Lung DNase [Search on ENCODE]
GSM1014530 None Fibroblast Heart DNase [Search on ENCODE]
GSM1014520 None Epithelium None DNase [Search on ENCODE]
GSM723023 None Epithelium Fetal Heart DNase [Search on ENCODE]
GSM723024 IMR90 Fibroblast Lung DNase [Search on ENCODE]
GSM774219 None Epithelium Fetal Placenta DNase [Search on ENCODE]
GSM774227 None Epithelium Fetal Lung Right DNase [Search on ENCODE]
GSM774225 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM774218 None None Fetal Muscle Upper Trunk DNase [Search on ENCODE]
GSM774231 None Epithelium Fetal Lung Right DNase [Search on ENCODE]
GSM774215 None Epithelium Fetal Placenta DNase [Search on ENCODE]
GSM774206 None Epithelium Fetal Lung Right DNase [Search on ENCODE]
GSM774217 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM774237 None Epithelium Fetal Lung Left DNase [Search on ENCODE]
GSM774214 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM774205 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM849031 None Fibroblast Pulmonary Artery DNase [Search on ENCODE]
GSM849029 None Fibroblast Umbilical Vein DNase [Search on ENCODE]
GSM849025 None Epithelium Lung DNase [Search on ENCODE]
GSM849028 None Fibroblast Lung DNase [Search on ENCODE]
GSM1102739 None Epithelium Small Intestine DNase [Search on ENCODE]
GSM1224666 HCT-116 None Colon DNase [Search on ENCODE]
GSM1255280 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1255282 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1338308 None Fibroblast None DNase [Search on ENCODE]
GSM736601 None Embryonic Fibroblast Heart DNase [Search on ENCODE]
GSM736516 None Myocyte Heart DNase [Search on ENCODE]
GSM736493 HCT-116 None Colon DNase [Search on ENCODE]
GSM736510 HeLa-S3 Epithelium Cervix DNase [Search on ENCODE]
GSM736564 HeLa-S3 Epithelium Cervix DNase [Search on ENCODE]
GSM1024767 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024783 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024791 None Monocyte Blood DNase [Search on ENCODE]
GSM1406342 None Macrophage Blood DNase [Search on ENCODE]
GSM1406344 None Macrophage Blood DNase [Search on ENCODE]
GSM1406347 None Macrophage Blood DNase [Search on ENCODE]
GSM763533 HeLa Epithelium Cervix DNase [Search on ENCODE]
GSM1565735 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM1662261 None Fibroblast None ATAC-seq [Search on ENCODE]
GSM1855976 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1855977 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1855978 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1855979 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1855980 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1855981 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1855982 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
ENCSR257BGZ_2 ACHN None Kidney DNase [Search on ENCODE]
ENCSR426IEA_1 KBM-7 Myeloblast Blood DNase [Search on ENCODE]
ENCSR512CWR None None Umbilical Cord DNase [Search on ENCODE]
ENCSR515EWI_1 Caki-2 None Kidney DNase [Search on ENCODE]
ENCSR705CNJ_2 None None Heart DNase [Search on ENCODE]
ENCSR932KWJ_2 A-172 Glial Cell Brain DNase [Search on ENCODE]
ENCSR636VCX_1 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
ENCSR000FDI_2 HT1080 None Connective Tissue DNase [Search on ENCODE]
ENCSR000FJH_3 NCI-H460 None None DNase [Search on ENCODE]
ENCSR215FCQ_1 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
ENCSR228IKB_1 None None Pancreas DNase [Search on ENCODE]
ENCSR373BIX_2 None Dendritic Cell None DNase [Search on ENCODE]
ENCSR499IFY_1 None None Placenta DNase [Search on ENCODE]
ENCSR560CCF_2 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
ENCSR575VMI_1 None None Placenta DNase [Search on ENCODE]
ENCSR575VMI_2 None None Placenta DNase [Search on ENCODE]
ENCSR593LTJ_1 None Trophoblast cell None DNase [Search on ENCODE]
ENCSR593LTJ_2 None Trophoblast cell None DNase [Search on ENCODE]
ENCSR678ILN_2 None Stem cell None DNase [Search on ENCODE]
ENCSR804RSI_1 None None Heart DNase [Search on ENCODE]
ENCSR809LCE_1 None Trophoblast cell None DNase [Search on ENCODE]
ENCSR914PJE_1 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
ENCSR964MZQ_1 None Trophoblast cell None DNase [Search on ENCODE]
GSM1972149 HT1080 None Connective Tissue ATAC-seq [Search on ENCODE]
GSM2241147 T47D Epithelium Mammary Gland ATAC-seq [Search on ENCODE]
GSM2083766 None Macrophage None ATAC-seq [Search on ENCODE]
GSM2242135 MDA-MB-231 Epithelium Breast DNase [Search on ENCODE]
GSM2242136 MDA-MB-231 Epithelium Breast DNase [Search on ENCODE]
GSM1876025 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876024 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876026 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876021 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876023 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876022 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM2401442 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2692571 PC-9 Lung Cancer Cell Lung ATAC-seq [Search on ENCODE]
GSM2401443 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2679879 None Monocyte Blood ATAC-seq [Search on ENCODE]
GSM2679877 None Monocyte Blood ATAC-seq [Search on ENCODE]
GSM2714245 MCF-7 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM2714244 MCF-7 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM2679880 None Monocyte Blood ATAC-seq [Search on ENCODE]
GSM2679887 None Monocyte Blood ATAC-seq [Search on ENCODE]
GSM2692563 PC-9 Lung Cancer Cell Lung ATAC-seq [Search on ENCODE]
GSM2430672 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2700774 NB69 NB69 None ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.