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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 28986395-28986396 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM970257 None Proerythroblast Fetal Liver GATA1 [Search on ENCODE]
GSM785493 None Monocyte None H2AZ [Search on ENCODE]
GSM785499 None Macrophage None H2AZ [Search on ENCODE]
GSM1126511 None CD14 cell None H2AZ [Search on ENCODE]
GSM1126513 None CD14 cell None H2AZ [Search on ENCODE]
GSM1126514 None CD14 cell None H2AZ [Search on ENCODE]
GSM894108 MM1.S B Lymphocyte Blood MYC [Search on ENCODE]
GSM1009631 None Endothelial Cell Umbilical Vein EP300 [Search on ENCODE]
GSM1084800 OCI-Ly7 B cell lymphoma Blood BACH2 [Search on ENCODE]
GSM1195560 None B Lymphocyte Blood IRF4 [Search on ENCODE]
GSM1057026 None Monocyte Blood IRF1 [Search on ENCODE]
GSM1133650 OCI-Ly1 B cell lymphoma Bone Marrow BRD4 [Search on ENCODE]
GSM1133657 OCI-Ly1 B cell lymphoma Bone Marrow BCL6 [Search on ENCODE]
GSM1233953 GM12891 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM916979 None Endothelial Cell Artery T [Search on ENCODE]
GSM1291197 None None Cord blood TAL1 [Search on ENCODE]
GSM1003556 None Endothelial Cell Umbilical Vein H2AZ [Search on ENCODE]
GSM1003548 None Monocyte Blood H2AZ [Search on ENCODE]
GSM1003530 NHLF Fibroblast Lung H2AZ [Search on ENCODE]
GSM733766 None Osteoblast Bone H2AZ [Search on ENCODE]
GSM935558 GM12878 B Lymphocyte Blood USF2 [Search on ENCODE]
GSM935562 GM12878 B Lymphocyte Blood EP300 [Search on ENCODE]
GSM935572 None Endothelial Cell Umbilical Vein MAX [Search on ENCODE]
GSM935433 K562 Erythroblast Bone Marrow NFYA [Search on ENCODE]
GSM803531 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM803398 GM12891 Lymphoblastoid Blood SPI1 [Search on ENCODE]
GSM1334005 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM1334006 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM1334007 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM1334008 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM1421017 None Monocyte None SPI1 [Search on ENCODE]
GSM1438986 None Pre-B Lymphocyte None BCL6 [Search on ENCODE]
GSM1642761 786-O Epithelium Kidney SPI1 [Search on ENCODE]
GSM1642769 786-O Epithelium Kidney SPI1 [Search on ENCODE]
GSM1703900 None B Lymphocyte None SPI1 [Search on ENCODE]
GSM1703922 None B Lymphocyte None SPI1 [Search on ENCODE]
GSM1893928 MOLM-14 Myeloid Cell None CDK8 [Search on ENCODE]
GSM1893930 MOLM-14 Myeloid Cell None CDK8 [Search on ENCODE]
GSM1934095 SEM Pre-B Lymphocyte None KMT2A [Search on ENCODE]
ENCSR189YYK_2 GM12878 B Lymphocyte Blood ZBTB40 [Search on ENCODE]
ENCSR338MMB_1 None None Liver NR2F2 [Search on ENCODE]
ENCSR739IHN_1 GM12878 B Lymphocyte Blood TBX21 [Search on ENCODE]
ENCSR874AFU_2 GM12878 B Lymphocyte Blood IKZF1 [Search on ENCODE]
GSM754333 GM12878 B Lymphocyte Blood MAX [Search on ENCODE]
GSM1681423 None Macrophage Blood SPI1 [Search on ENCODE]
GSM2302869 MM1.S B Lymphocyte Blood HDAC1 [Search on ENCODE]
GSM2421988 None None meningioma TRAF7 [Search on ENCODE]
GSM2421984 None None meningioma TRAF7 [Search on ENCODE]
GSM2364555 None Monocyte Bone Marrow KMT2A [Search on ENCODE]
GSM2405928 MV4;11 Acute myeloid leukemia None CDK9 [Search on ENCODE]
GSM2405924 MV4;11 Acute myeloid leukemia None CDK9 [Search on ENCODE]
GSM2183710 MV4;11 Acute myeloid leukemia None MLLT1 [Search on ENCODE]
GSM2432982 D283 Med None None NEUROD1 [Search on ENCODE]
GSM2432981 D283 Med None None OTX2 [Search on ENCODE]
GSM2432980 D283 Med None None OTX2 [Search on ENCODE]
GSM2432943 D283 Med None None OTX2 [Search on ENCODE]
GSM2432942 D283 Med None None OTX2 [Search on ENCODE]
GSM2574799 GM12878 B Lymphocyte Blood USF2 [Search on ENCODE]
GSM2359983 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2359982 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2679938 None Monocyte Blood T [Search on ENCODE]
GSM2592808 None Macrophage Blood SPI1 [Search on ENCODE]
GSM722423 U937 None Pleura CEBPA [Search on ENCODE]
GSM2394415 JHU-06 Endothelial Cell None JUN [Search on ENCODE]
GSM2394424 JHU-06 Endothelial Cell None RELA [Search on ENCODE]
GSM940324 SEM Pre-B Lymphocyte None MEIS1 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.