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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 28986395-28986396 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM701541 None Monocyte Blood DNase [Search on ENCODE]
GSM701509 None Lymphocyte Spleen DNase [Search on ENCODE]
GSM701507 None B Lymphocyte Spleen DNase [Search on ENCODE]
GSM701493 None B Lymphocyte Spleen DNase [Search on ENCODE]
GSM701492 None B Lymphocyte Spleen DNase [Search on ENCODE]
GSM1024610 None Melanocyte Foreskin DNase [Search on ENCODE]
GSM778663 GM18486 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM646565 None Epithelium None DNase [Search on ENCODE]
GSM646560 None Epithelium Amnion DNase [Search on ENCODE]
GSM646567 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
GSM646570 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM1102737 None T Lymphocyte Cord blood DNase [Search on ENCODE]
GSM1102736 None Monocyte Blood DNase [Search on ENCODE]
GSM816665 GM12878 B Lymphocyte Blood DNase [Search on ENCODE]
GSM1027311 None None Fetal Adrenal Gland DNase [Search on ENCODE]
GSM1014528 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM1014515 None Myocyte Heart DNase [Search on ENCODE]
GSM1014525 None B Lymphocyte Blood DNase [Search on ENCODE]
GSM1014530 None Fibroblast Heart DNase [Search on ENCODE]
GSM1014520 None Epithelium None DNase [Search on ENCODE]
GSM774243 None Melanocyte Foreskin DNase [Search on ENCODE]
GSM849031 None Fibroblast Pulmonary Artery DNase [Search on ENCODE]
GSM849029 None Fibroblast Umbilical Vein DNase [Search on ENCODE]
GSM1220604 None B Lymphocyte Spleen DNase [Search on ENCODE]
GSM1024765 None B Lymphocyte Blood DNase [Search on ENCODE]
GSM1024766 None B Lymphocyte Blood DNase [Search on ENCODE]
GSM736521 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM1024763 None Endothelial Cell Pulmonary Artery DNase [Search on ENCODE]
GSM736499 None Endothelial Cell Kidney DNase [Search on ENCODE]
GSM736630 None Epithelium None DNase [Search on ENCODE]
GSM736533 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736575 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM1406342 None Macrophage Blood DNase [Search on ENCODE]
GSM1406344 None Macrophage Blood DNase [Search on ENCODE]
GSM1581834 None Myeloid Cell None DNase [Search on ENCODE]
GSM2202931 None Endothelial Cell Umbilical Vein ATAC-seq [Search on ENCODE]
GSM1832752 None B Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM1832757 None B Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM1832758 None B Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM1832759 None B Lymphocyte Blood ATAC-seq [Search on ENCODE]
ENCSR489NAM_1 OCI-Ly7 B cell lymphoma Blood DNase [Search on ENCODE]
ENCSR489NAM_2 OCI-Ly7 B cell lymphoma Blood DNase [Search on ENCODE]
ENCSR627GNV_2 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
GSM2243040 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM2243039 None Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2243038 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM2243037 None Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2243034 Gen2.2 Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2243033 CAL-1 Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2544218 THP-1 Macrophage None ATAC-seq [Search on ENCODE]
GSM489282 GM12892 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM1876024 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876023 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM2898847 None Cardiomyocyte None ATAC-seq [Search on ENCODE]
GSM2394396 JHU-06 Endothelial Cell None ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.