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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 89299862-89299863 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM623512 GM18507 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM778727 GM19222 Lymphoblastoid None DNase [Search on ENCODE]
GSM778726 GM19210 Lymphoblastoid None DNase [Search on ENCODE]
GSM778725 GM19209 Lymphoblastoid None DNase [Search on ENCODE]
GSM778730 GM19238 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM778731 GM19239 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM778713 GM19159 Lymphoblastoid None DNase [Search on ENCODE]
GSM778719 GM19200 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM778704 GM19137 Lymphoblastoid None DNase [Search on ENCODE]
GSM778699 GM19116 Lymphoblastoid None DNase [Search on ENCODE]
GSM778687 GM18870 Lymphoblastoid None DNase [Search on ENCODE]
GSM778683 GM18858 Lymphoblastoid None DNase [Search on ENCODE]
GSM778695 GM19098 Lymphoblastoid None DNase [Search on ENCODE]
GSM778663 GM18486 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM778685 GM18861 Lymphoblastoid None DNase [Search on ENCODE]
GSM778682 GM18856 Lymphoblastoid None DNase [Search on ENCODE]
GSM646568 GM06990 B Lymphocyte Blood DNase [Search on ENCODE]
GSM646564 None Fibroblast Skin DNase [Search on ENCODE]
GSM646569 None Th1 None DNase [Search on ENCODE]
GSM909314 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM931362 WI-38 Fibroblast Lung DNase [Search on ENCODE]
GSM816665 GM12878 B Lymphocyte Blood DNase [Search on ENCODE]
GSM816658 GM19238 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM816659 GM19239 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM816653 GM18507 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM1027320 None None Stomach DNase [Search on ENCODE]
GSM1014523 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM1014541 None Th17 None DNase [Search on ENCODE]
GSM1014519 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM1014526 GM12865 B Lymphocyte Blood DNase [Search on ENCODE]
GSM1014522 None Th2 None DNase [Search on ENCODE]
GSM1014540 None Th1 None DNase [Search on ENCODE]
GSM1014538 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM849027 None Cortex Kidney DNase [Search on ENCODE]
GSM736620 GM12878 B Lymphocyte Blood DNase [Search on ENCODE]
GSM736542 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736511 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736549 None Cortex Kidney DNase [Search on ENCODE]
GSM736557 None Cortex Kidney DNase [Search on ENCODE]
GSM736527 HRE Epithelium None DNase [Search on ENCODE]
GSM1024773 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM1024794 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM736543 RPTEC Epithelium Kidney DNase [Search on ENCODE]
GSM736539 RPTEC Epithelium Kidney DNase [Search on ENCODE]
GSM1024760 None Th1 Blood DNase [Search on ENCODE]
GSM736592 None Th1 Blood DNase [Search on ENCODE]
GSM1024749 None Th1 Blood DNase [Search on ENCODE]
GSM1024740 None Th2 Blood DNase [Search on ENCODE]
GSM1024739 None Th2 Blood DNase [Search on ENCODE]
GSM1024744 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM736613 WI-38 Fibroblast Lung DNase [Search on ENCODE]
GSM736526 WI-38 Fibroblast Lung DNase [Search on ENCODE]
GSM1565734 None Dendritic Cell None ATAC-seq [Search on ENCODE]
ENCSR405TXU_1 None Adipocyte None DNase [Search on ENCODE]
GSM2241147 T47D Epithelium Mammary Gland ATAC-seq [Search on ENCODE]
GSM2359981 None Macrophage None ATAC-seq [Search on ENCODE]
GSM2365856 None melanoma None ATAC-seq [Search on ENCODE]
GSM489286 GM19238 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM489288 GM19239 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM2898852 LCL Lymphoblastoid Blood ATAC-seq [Search on ENCODE]
GSM2668125 GM12878 Lymphoblastoid Forebrain ATAC-seq [Search on ENCODE]
GSM2401444 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2977484 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2898856 LCL Lymphoblastoid Blood ATAC-seq [Search on ENCODE]
GSM2898854 LCL Lymphoblastoid Blood ATAC-seq [Search on ENCODE]
GSM2430668 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2430669 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2898871 LCL Lymphoblastoid Blood ATAC-seq [Search on ENCODE]
GSM2898858 LCL Lymphoblastoid Blood ATAC-seq [Search on ENCODE]
GSM2394396 JHU-06 Endothelial Cell None ATAC-seq [Search on ENCODE]
GSM2430671 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2898865 LCL Lymphoblastoid Blood ATAC-seq [Search on ENCODE]
GSM2898863 LCL Lymphoblastoid Blood ATAC-seq [Search on ENCODE]
GSM2898860 LCL Lymphoblastoid Blood ATAC-seq [Search on ENCODE]
GSM2898861 LCL Lymphoblastoid Blood ATAC-seq [Search on ENCODE]
GSM2898868 LCL Lymphoblastoid Blood ATAC-seq [Search on ENCODE]
GSM2898869 LCL Lymphoblastoid Blood ATAC-seq [Search on ENCODE]
GSM2898857 LCL Lymphoblastoid Blood ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.