Home
Virus
Gene
Disease
Dataset
Download
Help
 
HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 32789398-32789399 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM530665 IMR90 Fibroblast Lung DNase [Search on ENCODE]
GSM623517 NHEK Keratinocyte Skin DNase [Search on ENCODE]
GSM623514 HeLa-S3 Epithelium Cervix DNase [Search on ENCODE]
GSM905351 U87MG Glial Cell Brain DNase [Search on ENCODE]
GSM905352 U87MG Glial Cell Brain DNase [Search on ENCODE]
GSM905354 U87MG Glial Cell Brain DNase [Search on ENCODE]
GSM646564 None Fibroblast Skin DNase [Search on ENCODE]
GSM646565 None Epithelium None DNase [Search on ENCODE]
GSM646560 None Epithelium Amnion DNase [Search on ENCODE]
GSM646561 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM646570 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM909312 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM931362 WI-38 Fibroblast Lung DNase [Search on ENCODE]
GSM878645 None None Fetal Skin Biceps Left DNase [Search on ENCODE]
GSM878644 None None Fetal Skin Biceps Left DNase [Search on ENCODE]
GSM878636 None None Fetal Skin Abdomen DNase [Search on ENCODE]
GSM878624 None Fibroblast Fetal Skin Back DNase [Search on ENCODE]
GSM878639 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM878658 None None Fetal Adrenal Gland DNase [Search on ENCODE]
GSM878647 None None Fetal Skin Quadriceps Right DNase [Search on ENCODE]
GSM878649 None None Fetal Skin Quadriceps Left DNase [Search on ENCODE]
GSM878640 None None Fetal Skin Upper Back DNase [Search on ENCODE]
GSM878646 None None Fetal Skin Quadriceps Right DNase [Search on ENCODE]
GSM878635 None None Fetal Skin Abdomen DNase [Search on ENCODE]
GSM878643 None None Fetal Skin Biceps Right DNase [Search on ENCODE]
GSM816643 HeLa-S3 Epithelium Cervix DNase [Search on ENCODE]
GSM816668 H54 Glial Cell Brain DNase [Search on ENCODE]
GSM816633 HeLa-S3 Epithelium Cervix DNase [Search on ENCODE]
GSM1027350 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM817194 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM817197 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM817196 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM1014510 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM1014539 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1014512 NHDF-neo Fibroblast Skin DNase [Search on ENCODE]
GSM1014514 None Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1014529 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM1014518 None Embryonic Fibroblast Heart DNase [Search on ENCODE]
GSM1014532 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM1014535 RPMI-7951 Melanoma Cell Skin DNase [Search on ENCODE]
GSM1014508 HA-sp Astrocyte Spinal Cord DNase [Search on ENCODE]
GSM1014511 None Epithelium Esophagus DNase [Search on ENCODE]
GSM1014519 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM1014527 AG10803 Fibroblast Skin DNase [Search on ENCODE]
GSM1014524 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1014515 None Myocyte Heart DNase [Search on ENCODE]
GSM1014530 None Fibroblast Heart DNase [Search on ENCODE]
GSM1014531 None Embryonic Fibroblast Foreskin DNase [Search on ENCODE]
GSM1014520 None Epithelium None DNase [Search on ENCODE]
GSM1014534 HGF Fibroblast Gingiva DNase [Search on ENCODE]
GSM1014538 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM723024 IMR90 Fibroblast Lung DNase [Search on ENCODE]
GSM774241 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM774240 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM849031 None Fibroblast Pulmonary Artery DNase [Search on ENCODE]
GSM849029 None Fibroblast Umbilical Vein DNase [Search on ENCODE]
GSM849025 None Epithelium Lung DNase [Search on ENCODE]
GSM849027 None Cortex Kidney DNase [Search on ENCODE]
GSM849026 None Astrocyte Brain DNase [Search on ENCODE]
GSM849028 None Fibroblast Lung DNase [Search on ENCODE]
GSM1220605 None Fibroblast Fetal Skin Back DNase [Search on ENCODE]
GSM1220606 None Fibroblast Fetal Skin Scalp DNase [Search on ENCODE]
GSM1220607 None None Fetal Skin Abdomen DNase [Search on ENCODE]
GSM1220608 None None Fetal Skin Upper Back DNase [Search on ENCODE]
GSM1220609 None None Fetal Skin Biceps Right DNase [Search on ENCODE]
GSM1220610 None None Fetal Skin Quadriceps Right DNase [Search on ENCODE]
GSM1224666 HCT-116 None Colon DNase [Search on ENCODE]
GSM1224667 HCT-116 None Colon DNase [Search on ENCODE]
GSM1338307 None Fibroblast None DNase [Search on ENCODE]
GSM1338308 None Fibroblast None DNase [Search on ENCODE]
GSM1338309 None Fibroblast None DNase [Search on ENCODE]
GSM1338310 None Fibroblast None DNase [Search on ENCODE]
GSM736518 BJ Fibroblast Skin DNase [Search on ENCODE]
GSM736596 BJ Fibroblast Skin DNase [Search on ENCODE]
GSM736538 None Astrocyte Cerebellum DNase [Search on ENCODE]
GSM736606 None Epithelium Amnion DNase [Search on ENCODE]
GSM736631 None Epithelium Amnion DNase [Search on ENCODE]
GSM736540 None Fibroblast Heart DNase [Search on ENCODE]
GSM736568 None Fibroblast Heart DNase [Search on ENCODE]
GSM736494 None Embryonic Fibroblast Heart DNase [Search on ENCODE]
GSM736601 None Embryonic Fibroblast Heart DNase [Search on ENCODE]
GSM736516 None Myocyte Heart DNase [Search on ENCODE]
GSM736547 None Fibroblast Eye DNase [Search on ENCODE]
GSM736493 HCT-116 None Colon DNase [Search on ENCODE]
GSM736564 HeLa-S3 Epithelium Cervix DNase [Search on ENCODE]
GSM736524 None Embryonic Fibroblast Foreskin DNase [Search on ENCODE]
GSM736634 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM736552 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM736541 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM736628 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM736542 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736555 None Fibroblast Pulmonary Artery DNase [Search on ENCODE]
GSM736614 None Fibroblast Pulmonary Artery DNase [Search on ENCODE]
GSM736632 None Fibroblast Periodontal Ligament DNase [Search on ENCODE]
GSM736574 None Fibroblast Lung DNase [Search on ENCODE]
GSM736503 None Fibroblast Lung DNase [Search on ENCODE]
GSM736549 None Cortex Kidney DNase [Search on ENCODE]
GSM736557 None Cortex Kidney DNase [Search on ENCODE]
GSM736527 HRE Epithelium None DNase [Search on ENCODE]
GSM736630 None Epithelium None DNase [Search on ENCODE]
GSM736623 None Epithelium None DNase [Search on ENCODE]
GSM1024787 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1024786 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1024773 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM1024794 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM736581 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM736584 None Astrocyte Brain DNase [Search on ENCODE]
GSM736544 None Astrocyte Brain DNase [Search on ENCODE]
GSM736520 NHDF-Ad Fibroblast Skin DNase [Search on ENCODE]
GSM736567 NHDF-Ad Fibroblast Skin DNase [Search on ENCODE]
GSM736612 NHLF Fibroblast Lung DNase [Search on ENCODE]
GSM736536 NHLF Fibroblast Lung DNase [Search on ENCODE]
GSM736519 PANC-1 None Pancreas DNase [Search on ENCODE]
GSM736517 PANC-1 None Pancreas DNase [Search on ENCODE]
GSM1024779 RPMI-7951 Melanoma Cell Skin DNase [Search on ENCODE]
GSM1024793 RPMI-7951 Melanoma Cell Skin DNase [Search on ENCODE]
GSM736608 SAEC Epithelium Lung DNase [Search on ENCODE]
GSM736617 SAEC Epithelium Lung DNase [Search on ENCODE]
GSM736497 SKMC Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM736593 SKMC Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1406342 None Macrophage Blood DNase [Search on ENCODE]
GSM1406347 None Macrophage Blood DNase [Search on ENCODE]
GSM763533 HeLa Epithelium Cervix DNase [Search on ENCODE]
GSM763534 BJ Fibroblast Skin DNase [Search on ENCODE]
GSM1645709 None Keratinocyte None ATAC-seq [Search on ENCODE]
GSM1662258 None Fibroblast None ATAC-seq [Search on ENCODE]
GSM1662261 None Fibroblast None ATAC-seq [Search on ENCODE]
GSM1855976 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1855977 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1855979 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1855980 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1855981 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1662254 None Epithelium Corneal Epithelium ATAC-seq [Search on ENCODE]
ENCSR037PGI_2 786-0 None Kidney DNase [Search on ENCODE]
ENCSR083STA_1 MG-63 Fibroblast Bone DNase [Search on ENCODE]
ENCSR240TPI_1 BJ Fibroblast Skin DNase [Search on ENCODE]
ENCSR257BGZ_2 ACHN None Kidney DNase [Search on ENCODE]
ENCSR346IHH_1 Daoy Polygonal Cerebellum DNase [Search on ENCODE]
ENCSR346IHH_2 Daoy Polygonal Cerebellum DNase [Search on ENCODE]
ENCSR405TXU_1 None Adipocyte None DNase [Search on ENCODE]
ENCSR405TXU_2 None Adipocyte None DNase [Search on ENCODE]
ENCSR515EWI_1 Caki-2 None Kidney DNase [Search on ENCODE]
ENCSR548MMD_1 BJ Fibroblast Skin DNase [Search on ENCODE]
ENCSR620WAR_2 SJSA-1 Fibroblast Bone DNase [Search on ENCODE]
ENCSR932KWJ_2 A-172 Glial Cell Brain DNase [Search on ENCODE]
ENCSR940NLN_1 PC-9 Lung Cancer Cell Lung DNase [Search on ENCODE]
ENCSR217TAW_1 None Fibroblast None DNase [Search on ENCODE]
ENCSR217TAW_2 None Fibroblast None DNase [Search on ENCODE]
ENCSR000FDI_2 HT1080 None Connective Tissue DNase [Search on ENCODE]
ENCSR691MQJ_1 EL None None DNase [Search on ENCODE]
ENCSR691MQJ_3 EL None None DNase [Search on ENCODE]
ENCSR785BDQ_1 None glomerular visceral epithelial cell None DNase [Search on ENCODE]
GSM1972149 HT1080 None Connective Tissue ATAC-seq [Search on ENCODE]
GSM2174880 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174878 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174877 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2098983 HFF Fibroblast Foreskin ATAC-seq [Search on ENCODE]
GSM2098981 HFF Fibroblast Foreskin ATAC-seq [Search on ENCODE]
GSM2241147 T47D Epithelium Mammary Gland ATAC-seq [Search on ENCODE]
GSM816635 NHEK Keratinocyte Skin DNase [Search on ENCODE]
GSM2242135 MDA-MB-231 Epithelium Breast DNase [Search on ENCODE]
GSM2242136 MDA-MB-231 Epithelium Breast DNase [Search on ENCODE]
GSM1876025 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876024 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876027 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876026 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876021 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876023 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876022 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876028 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM2224597 LoVo None Colon DNase [Search on ENCODE]
GSM2679899 None Monocyte Blood ATAC-seq [Search on ENCODE]
GSM2401442 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM816654 None Osteoblast Bone DNase [Search on ENCODE]
GSM2401443 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2977487 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2676285 MCF-10A Epithelium Breast DNase [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.