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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 37497945-37498309 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM701538 None None Fetal Stomach DNase [Search on ENCODE]
GSM701534 None Epithelium Fetal Lung Left DNase [Search on ENCODE]
GSM701531 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM701530 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM701527 None Epithelium Fetal Lung Left DNase [Search on ENCODE]
GSM701524 None Epithelium Fetal Lung Left DNase [Search on ENCODE]
GSM701523 None Epithelium Fetal Lung Right DNase [Search on ENCODE]
GSM701521 None None Fetal Stomach DNase [Search on ENCODE]
GSM701498 None None Fetal Stomach DNase [Search on ENCODE]
GSM701495 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM665835 None Epithelium Small Intestine DNase [Search on ENCODE]
GSM665832 None Epithelium Lung DNase [Search on ENCODE]
GSM665825 None Epithelium Small Intestine DNase [Search on ENCODE]
GSM665818 None Epithelium Large Intestine DNase [Search on ENCODE]
GSM665808 None Epithelium Lung DNase [Search on ENCODE]
GSM595930 None Epithelium Lung DNase [Search on ENCODE]
GSM595924 None Epithelium Lung DNase [Search on ENCODE]
GSM595915 None Epithelium Lung DNase [Search on ENCODE]
GSM530662 None Epithelium Lung DNase [Search on ENCODE]
GSM1036260 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM1024606 None None Fetal Stomach DNase [Search on ENCODE]
GSM1059532 None None Fetal Stomach DNase [Search on ENCODE]
GSM878660 None None Fetal Stomach DNase [Search on ENCODE]
GSM878665 None None Fetal Stomach DNase [Search on ENCODE]
GSM1027318 None None Fetal Stomach DNase [Search on ENCODE]
GSM1027326 None None Pancreas DNase [Search on ENCODE]
GSM1027335 None None Pancreas DNase [Search on ENCODE]
GSM1027325 None None Stomach DNase [Search on ENCODE]
GSM1027331 None None Fetal Stomach DNase [Search on ENCODE]
GSM1027344 None Epithelium Fetal Lung Right DNase [Search on ENCODE]
GSM1027345 None Epithelium Fetal Lung Left DNase [Search on ENCODE]
GSM1027324 None Epithelium Fetal Renal Pelvis DNase [Search on ENCODE]
GSM1027320 None None Stomach DNase [Search on ENCODE]
GSM1027348 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM1027327 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM817173 None None Fetal Stomach DNase [Search on ENCODE]
GSM817175 None Epithelium Fetal Lung Left DNase [Search on ENCODE]
GSM1014511 None Epithelium Esophagus DNase [Search on ENCODE]
GSM1014536 T47D Epithelium Mammary Gland DNase [Search on ENCODE]
GSM774227 None Epithelium Fetal Lung Right DNase [Search on ENCODE]
GSM774211 None Epithelium Fetal Lung Left DNase [Search on ENCODE]
GSM774225 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM774229 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM774202 None None Fetal Stomach DNase [Search on ENCODE]
GSM774231 None Epithelium Fetal Lung Right DNase [Search on ENCODE]
GSM774228 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM774212 None None Fetal Stomach DNase [Search on ENCODE]
GSM774210 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM774207 None Epithelium Fetal Lung Left DNase [Search on ENCODE]
GSM774216 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM774217 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM774237 None Epithelium Fetal Lung Left DNase [Search on ENCODE]
GSM849027 None Cortex Kidney DNase [Search on ENCODE]
GSM1102739 None Epithelium Small Intestine DNase [Search on ENCODE]
GSM1255268 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1255271 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1255277 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM736565 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM736603 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM736588 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024764 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024767 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024784 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024783 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024761 T47D Epithelium Mammary Gland DNase [Search on ENCODE]
GSM1024762 T47D Epithelium Mammary Gland DNase [Search on ENCODE]
ENCSR364MFN_2 None Hepatocyte None DNase [Search on ENCODE]
ENCSR814KRX_1 HT29 None Colon DNase [Search on ENCODE]
ENCSR814KRX_2 HT29 None Colon DNase [Search on ENCODE]
ENCSR940NLN_1 PC-9 Lung Cancer Cell Lung DNase [Search on ENCODE]
ENCSR940NLN_2 PC-9 Lung Cancer Cell Lung DNase [Search on ENCODE]
ENCSR503HIB_1 None Cortex Cerebellum DNase [Search on ENCODE]
ENCSR095GWE_2 None None Stomach DNase [Search on ENCODE]
ENCSR158VAT_2 None None Thyroid DNase [Search on ENCODE]
ENCSR228IKB_1 None None Pancreas DNase [Search on ENCODE]
ENCSR522WLH_1 None None Pancreas DNase [Search on ENCODE]
ENCSR657DFR_2 None None Thyroid DNase [Search on ENCODE]
ENCSR790FIS_1 None None Colon DNase [Search on ENCODE]
ENCSR848XIY_1 None None Adrenal Gland DNase [Search on ENCODE]
ENCSR979ZJS_1 None None Colon DNase [Search on ENCODE]
GSM2224593 SK-CO-1 None None DNase [Search on ENCODE]
GSM2224590 HT29 colorectal adenocarcinoma None DNase [Search on ENCODE]
GSM1858670 ZR-75-1 Embryonic Stem Cell Breast DNase [Search on ENCODE]
GSM1858672 ZR-75-1 Embryonic Stem Cell Breast DNase [Search on ENCODE]
GSM2676284 MCF-10A Epithelium Breast DNase [Search on ENCODE]
GSM2676285 MCF-10A Epithelium Breast DNase [Search on ENCODE]
GSM2676282 MCF-10A Epithelium Breast DNase [Search on ENCODE]
GSM2676283 MCF-10A Epithelium Breast DNase [Search on ENCODE]
GSM822387 LNCaP Epithelium Prostate DNase [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.