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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 89693192-89693193 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM701493 None B Lymphocyte Spleen DNase [Search on ENCODE]
GSM701492 None B Lymphocyte Spleen DNase [Search on ENCODE]
GSM665831 None Epithelium Fetal Heart DNase [Search on ENCODE]
GSM530663 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM530657 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
GSM1059531 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM1059534 None None Fetal Muscle Trunk DNase [Search on ENCODE]
GSM1059533 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM1059529 None None Cord blood DNase [Search on ENCODE]
GSM646570 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM909314 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM1102737 None T Lymphocyte Cord blood DNase [Search on ENCODE]
GSM1102736 None Monocyte Blood DNase [Search on ENCODE]
GSM878654 None None Fetal Muscle Trunk DNase [Search on ENCODE]
GSM878630 None Epithelium Fetal Heart DNase [Search on ENCODE]
GSM816665 GM12878 B Lymphocyte Blood DNase [Search on ENCODE]
GSM1014528 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM1014529 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM1014532 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM1014525 None B Lymphocyte Blood DNase [Search on ENCODE]
GSM1014513 NB4 Promyelocytic cell Blood DNase [Search on ENCODE]
GSM723022 None Haematopoietic Progenitor Cell Cord blood DNase [Search on ENCODE]
GSM1220604 None B Lymphocyte Spleen DNase [Search on ENCODE]
GSM736622 BE2-C Neuroblast Brain DNase [Search on ENCODE]
GSM736508 BE2-C Neuroblast Brain DNase [Search on ENCODE]
GSM1024765 None B Lymphocyte Blood DNase [Search on ENCODE]
GSM736523 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736609 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736521 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736571 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736591 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736507 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736618 None Endothelial Cell Kidney DNase [Search on ENCODE]
GSM736604 NB4 Promyelocytic cell Blood DNase [Search on ENCODE]
GSM736578 SK-N-SH_RA Neuron Brain DNase [Search on ENCODE]
GSM1406338 None Macrophage Blood DNase [Search on ENCODE]
GSM1406342 None Macrophage Blood DNase [Search on ENCODE]
GSM1406344 None Macrophage Blood DNase [Search on ENCODE]
GSM1406347 None Macrophage Blood DNase [Search on ENCODE]
GSM1581820 None Stem cell Blood DNase [Search on ENCODE]
GSM1581821 None Myeloid Cell None DNase [Search on ENCODE]
GSM1581822 None Myeloid Cell None DNase [Search on ENCODE]
GSM1581823 None Myeloid Cell None DNase [Search on ENCODE]
GSM1581824 None Myeloid Cell None DNase [Search on ENCODE]
GSM1581825 None Myeloid Cell None DNase [Search on ENCODE]
GSM1581826 None Myeloid Cell None DNase [Search on ENCODE]
GSM1565735 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM1832756 None B Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM1832757 None B Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM1832758 None B Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM1832759 None B Lymphocyte Blood ATAC-seq [Search on ENCODE]
ENCSR426IEA_1 KBM-7 Myeloblast Blood DNase [Search on ENCODE]
ENCSR426IEA_2 KBM-7 Myeloblast Blood DNase [Search on ENCODE]
ENCSR771DAX_2 None None Globus Pallidus DNase [Search on ENCODE]
ENCSR620WAR_2 SJSA-1 Fibroblast Bone DNase [Search on ENCODE]
ENCSR705CNJ_2 None None Heart DNase [Search on ENCODE]
ENCSR373BIX_2 None Dendritic Cell None DNase [Search on ENCODE]
ENCSR664PKM_1 None None Heart DNase [Search on ENCODE]
ENCSR804RSI_1 None None Heart DNase [Search on ENCODE]
GSM2243040 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM2243039 None Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2243038 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM2243037 None Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2243036 MOLM-14 acute myeloid leukemia (AML) cell line None ATAC-seq [Search on ENCODE]
GSM2243035 HL-60 Promyeloblast Blood ATAC-seq [Search on ENCODE]
GSM2243034 Gen2.2 Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2243033 CAL-1 Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2544230 THP-1 Macrophage None ATAC-seq [Search on ENCODE]
GSM2544229 THP-1 Monocyte None ATAC-seq [Search on ENCODE]
GSM2544226 THP-1 Macrophage None ATAC-seq [Search on ENCODE]
GSM2544224 THP-1 Monocyte None ATAC-seq [Search on ENCODE]
GSM2544223 THP-1 Macrophage None ATAC-seq [Search on ENCODE]
GSM2544222 THP-1 Macrophage None ATAC-seq [Search on ENCODE]
GSM2544221 THP-1 Monocyte None ATAC-seq [Search on ENCODE]
GSM2544219 THP-1 Macrophage None ATAC-seq [Search on ENCODE]
GSM2544218 THP-1 Macrophage None ATAC-seq [Search on ENCODE]
GSM2359979 None Macrophage None ATAC-seq [Search on ENCODE]
GSM2083755 HL-60 Promyeloblast Blood ATAC-seq [Search on ENCODE]
GSM2083754 HL-60 Promyeloblast Blood ATAC-seq [Search on ENCODE]
GSM1876026 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM2401443 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2898847 None Cardiomyocyte None ATAC-seq [Search on ENCODE]
GSM2326844 None t(3;21) paitent None DNase [Search on ENCODE]
GSM2326845 None Plasmablast None DNase [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.